学術論文 |
- "Information maximization-based clustering of histopathology images using deep learning," PLOS Digital Health, vol.2, no.12, ppe0000391, Dec. 2023
- Mahfujul Islam Rumman, Naoaki Ono, Kenoki Ohuchida, MD. ALTAF-UL-AMIN, Alex Ming Huang, Shigehiko Kanaya
 [ doi:10.1371/journal.pdig.0000391 ]
- "Ergonomic Risk Prediction for Awkward Postures From #D Keypoints Using Deep Learning," IEEE Access, vol.11, pp114497-114508, Oct. 2023
- MD. Shakhaout Hossain, Sami Azam, Asif Karim, Sidratul Montaha, Ryana Quadir, Friso De Boer, MD. ALTAF-UL-AMIN
- "On finding natural antibiotics based on TCM formulae," Methods, vol.214, pp35-45, Jun. 2023
- Pei Gao, Nasution Ahmad Kamal, Shuo Yang, Zheng Chen, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1016/j.ymeth.2023.04.001 ]
- "On QSAR-based cardiotoxicity modeling with the expressiveness-enhanced graph learning model and dual-threshold scheme," Frontiers in Physiology, vol.14, pp1156286, May. 2023
- Huijia Wang, Guangxian Zhu, Leighton T Izu, Ye Chen-Izu, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.3389/fphys.2023.1156286 ]
- "Automated sleep staging via parallel frequency-cut attention," IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol.31, pp1974-1985, Feb. 2023
- Zheng Chen, Ziwei Yang, Lingwei Zhu, Wei Chen, Toshiyo Tamura, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.1109/TNSRE.2023.3243589 ]
- "Sleep Staging Framework with Physiologically Harmonized Sub-Networks," Methods (Elsevier), Dec. 2022
- Zheng Chen, Ziwei Yang, Dong Wang, Xin Zhu, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier," Antibiotics, vol.11, no.9, Sep. 2022
- Ahmad Kamal Nasution, Sony Hartono Wijaya, Pei Gao, Rumman Mahfujul Islam, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.3390/antibiotics11091199 ]
- "Automated Sleep Staging via Parallel Frequency-Cut Attention," arxiv, vol.2022, Jul. 2022
- Zheng Chen, Ziwei Yang, Lingwei Zhu, Wei Chen, Toshiyo Tamura, 小野 直亮, MD. ALTAF-UL-AMIN, 金谷 重彦
- "Recent Trends in Computational Research on Diseases," Life, vol.12, 14 Mar. 2022
- MD. ALTAF-UL-AMIN, 金谷 重彦, 小野 直亮, 黄 銘
- "Discussion of Cuffless Blood Pressure Prediction Using Plethysmograph Based on a Longitudinal Experiment: Is the Individual Model Necessary?," Life, vol.12, no.1, pp11, Dec. 2021
- Koshiro Kido, Zheng Chen, Toshiyo Tamura, Wei Chen, 小野 直亮, Masachika Takeuchi, MD. ALTAF-UL-AMIN, 金谷 重彦
- "Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach," life, vol.11, no.866, 23 Aug. 2021
- Sony Hartono Wijaya, Farit Mochamad Afendi, Irmanida Batubara, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.3390/life11080866 ]
- "Potential Arabidopsis thaliana glucosinolate genes identified from the coexpression modules using graph clustering approach," PeerJ, vol.9, 4 Aug. 2021
- Sarahani Harun, Nor Afiqah-Aleng, Mohammad Bozlul Karim, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Zeti-Azura Mohamed-Hussein
[ doi:10.7717/peerj.11876 ]
- "A system biology approach based on metabolic biomarkers and protein-protein interactions for identifying pathways underlying schizophrenia and bipolar disorder," Scientific reports, vol.11, no.1, pp1-11, 14 Jul. 2021
- MD. ALTAF-UL-AMIN, Kazuhisa Hirose, Joao V. Nani, Lucas C. Porta, Ljubica Tasic, Shaikh Farhad Hossain, Alex Ming Huang, Naoaki Ono, Mirian A. F. Hayashi, Shigehiko Kanaya
[ doi:10.1038/s41598-021-93653-3 ]
- "Image Analysis with Machine Learning Algorithms to Assist Breast Cancer Treatment," Vision, Sensing and Analytics: Integrative Approaches, pp327-355, Jun. 2021
- Abu Asaduzzaman, Fadi N. Sibai, Shigehiko Kanaya, MD. ALTAF-UL-AMIN, Md. Jashim Uddin, Kishore K. Chidella, Parthib Mitra
- "The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals," Computer Methods and Programs in Biomedicine, Jun. 2021
- Zheng Chen, Naoaki Ono, Wei Chen, Toshiyo Tamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.1016/j.cmpb.2021.106102 ]
- "A Real-Time Portable IoT System for Telework Tracking," Frontiers in Digital Health , vol.3, pp47, Jun. 2021
- Zhang Yongxin, Chen Zheng, Tian Haoyu, Kido Koshiro, Naoaki Ono, Chen Wei, Tamura Toshiyo, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.3389/fdgth.2021.643042 ]
- "Kinematics approach with neural networks for early detection of sepsis (KANNEDS)," BMC Medical Informatics and Decision Making, vol.21, no.1, pp1-11, 20 May. 2021
- Marcio Freire Cruz, Naoaki Ono, Alex Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Carlos Arthur Mattos Teixeira Cavalcante
[ doi:10.1186/s12911-021-01529-3 ]
- "Development of a biomarker database toward performing disease classification and finding disease interrelations," Database, 11 Mar. 2021
- Shaikh Farhad Hossain, Alex Ming Huang, Naoaki Ono, Aki Morita, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1093/database/baab011 ]
- "Embedding of Molecular Structure Using Molecular Hypergraph Variational Autoencoder with Metric Learning," Molecular Informatics, vol.2020, 8 Nov. 2020
- Daiki Koge, Naoaki Ono, Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1002/minf.202000203 ]
- "Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters," BMC Genomics, vol.2020, no.21, 1 Oct. 2020
- Yuki Higa, Young-Soo Kim, MD. ALTAF-UL-AMIN, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya
[ doi:10.1186/s12864-020-06864-9 ]
- "Databases for Natural Product Research," Comprehensive Natural Products III Chemistry and Biology, vol.7, pp222-238/, Sep. 2020
- Shigehiko Kanaya, MD. ALTAF-UL-AMIN, Aki Morita Hirai, Alex Ming Huang, Naoaki Ono
[ doi:10.1016/B978-0-12-409547-2.14744-4 ]
- "Systems Biology in the Context of Big Data, Statistics and Networks," Recent Advances in Biology, Sep. 2020
- MD. ALTAF-UL-AMIN, Farit Mohamad Afendi, Shigehiko Kanaya
- "Graph cluster approach in identifying novel proteins and significant pathways involved in polycystic ovary syndrome," Reproductive biomedicine online, vol.40, no.2, pp319, Feb. 2020
- Afiqah-Aleng, N, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Mohamed-Hussein, Z. A.
- "Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach," MBC Medical Genomics, vol.13, no.3, pp1-10, Feb. 2020
- MD. ALTAF-UL-AMIN, M. B. Karim, P. Hu, Naoaki Ono, Shigehiko Kanaya
- "Applications of Network Clustring in Natural Product Research," Comprehensive Natural Products III Chemistry and Biology, Jan. 2020
- MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1016/B978-0-12-409547-2.14785-7 ]
- "Comprehensive Exploration of Target‐specific Ligands Using a Graph Convolution Neural Network," Molecular Informatics, 9 Dec. 2019
- Yu Miyazaki, Naoaki Ono, Alex Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1002/minf.201900095 ]
- "Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks," BMC bioinformatics, vol.20, no.1, pp380, Dec. 2019
- Ryohei Eguchi, Naoaki Ono, Aki Hirai Morita, Tetsuo Katsuragi, Satoshi Nakamura, Alex Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1186/s12859-019-2963-6 ]
- "Implementation of BiClusO and its comparison with other biclustering algorithms," Springer, Oct. 2019
- Mohammad Bozlul Karim, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1007/s41109-019-0180-x ]
- "クラウドソーシングを活用した日本全体のCCMQ-J問診票調査における最適グループ数とその体質特性," 日本補完代替医療学会誌, vol.16, no.2, pp105-112, 2019.10
- 佐藤 真梨子, 川崎 聡大, Alex Ming Huang, 許 鳳浩, 小野 直亮, 江口 遼平, MD. ALTAF-UL-AMIN, 德田（角谷） 佐紀, 渡辺 斉志, 村山 宣人, Satoshi Nakamura, 山口 栞, 田中 宏季, Shigehiko Kanaya, 朱 燕波, 戴 昭宇, 王 琦, 上馬塲 和夫, 鈴木 信孝
[ doi:10.1625/jcam.16.105 ]
- "ヘルスケアにかかわる7種の質問票によるCCMQ-Jの体質の推定と解釈法," Japanese Journal of Complementary and Alternative Medicine, vol.16, no.2, pp79-93, Oct. 2019
- Guang SHI, Hoko KYO, Toshihiro KAWASAKI, Shigehiko Kanaya, Mariko SATO, Saki TOKUDA-KAKUTANI, Hiroshi WATANABE, Norihito MURAYAMA, Minako OHASHI, MD. ALTAF-UL-AMIN, Naoaki Ono, Hiroki Tanaka, Satoshi Nakamura, Kazuo UEBABA, Nobutaka SUZUKI, Alex Ming Huang
[ doi:10.1625/jcam.16.79 ]
- "Prediction of Metabolite Activities by Repetitive Clustering of the Structural Similarity Based Networks," Journal of Computer Aided Chemistry, vol.20, Oct. 2019
- Nobutaka Wakamatsu, 黄 銘, 小野 直亮, MD. ALTAF-UL-AMIN, 金谷 重彦
[ doi:10.2751/jcac.20.76 ]
- "Chemoinformatics Approach for Estimating Recovery Rates of Pesticides in Fruits and Vegetables," Journal of Computer Aided Chemistry, vol.20, pp92-103, 2019.10
- Takeshi Serino, Yoshizumi Takigawa, Sadao Nakamura, 黄 銘, 小野 直亮, MD. ALTAF-UL-AMIN, 金谷 重彦
[ doi:10.2751/jcac.20.92 ]
- "深層学習による肺癌組織画像の特徴抽出と遺伝子発現パターンとの相関解析," THE LUNG perspectives, vol.27, no.3, pp51-54, 2019.8.30
- 小野 直亮, 齋藤 朗, 黄 銘, MD. ALTAF-UL-AMIN, 金谷 重彦
- "BiClusO:A novel biclustering approach andbits application to species-VOC relational data," IEEE/ACM transactions on computational biology and bioinformatics, 1 Jun. 2019
- Mohammad Bozlul Karim, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1109/TCBB.2019.2914901 ]
- "A Novel CNN-Based Framework for Classification of Signal Quality and Sleep Position from a Capacitive ECG Measurement," Sensors, vol.19, no.7, 11 Apr. 2019
- Koshiro Kido, Toshiyo Tamura, Naoaki Ono, MD. ALTAF-UL-AMIN, Masaki Sekine, Shigehiko Kanaya, Alex Ming Huang
- "On the determination of important plants for ayurvedic formulas in Bangladesh using unsupervised machine learning approach," Academia Journal of Medicinal Plants, vol.7, pp36-41, 24 Jan. 2019
- Hossain M. Mofazzal, M. S. A. Gazi, M. Mahbub, A.A.P. Sayed, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
- "畳み込みニューラルネットワークを用いた画像解析," 日本化学会情報化学部会誌, vol.36, pp23-26, 2018.9
- 小野 直亮, 江口 遼平, 黄 銘, MD. ALTAF-UL-AMIN
- "Classification of lung adenocarcinoma transcriptome subtypes from pathological images using deep convolutional networks," International Journal of Computer Assisted Radiology and Surgery, no.s11548-018-1853-2, 29 Aug. 2018
- Victor Andrew A. Antonio, Naoaki Ono, Akira Saito, Tetsuo Sato, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "An integrative network-based approach to identify novel disease genes and pathways:a case study in the context of inflammatory bowel disease," BMC Bioinformatics, no.s12859-018-2251-x, 13 Jul. 2018
- Ryohei Eguchi, Mohammand Bozlul Karim, Pingzhao Hu, Tetsuo Sato, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
- "Metabolite-Content-Guided Prediction of Medicinal/Edible Properties in Plants for Bioprospecting," Current Research in Complementary & Alternative Medicine, ppCRCAM-130, Apr. 2018
- Kang Liu, Aki H. Morita, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
- "Data Intensive Study of Accessibility of Edible Species and Healthcare Across the Globe," 日本補完代替医療学会誌, vol.5, no.1, pp37-60, 26 Feb. 2018
- Satoshi Watanabe, Hoko Kyo, Liu Kang, Ryohei Eguchi, MD. ALTAF-UL-AMIN, Aki (Hirai) Morita, Minako Ohashi, Naoaki Ono, Alex Ming Huang, Yanbo Zhu, Qi Wang, Zhaoyu Dai, Yukiko Nakamura, Klaus W. Lange, Kazuo Uebaba, Shintaro Hashimoto, Shigehiko Kanaya, Nobutaka Suzuki
- "Metabolomic Studies of Indonesian Jamu Medicines: Prediction of Jamu Efficacy and Identification of Important Metabolites.," Molecular Informatics, no.1868-1751, 6 Jul. 2017
- Sony Hartono Wijaya, Irmanida Batubara, Takaaki Nishioka, Md. Altaf-Ul-Amin, Shigehiko Kanaya
- "Data science in chemistry] Centrality Values of Yeast Proteins in a PPI Network Are Related to Their Essentiality and Functions.," Journal of Computer Aided Chemistry, vol.18, pp94-109, 13 Jun. 2017
- Md Altaf-Ul-Amin, Sony Hartono Wijaya, Dodi Fitra Chandra, Shigehiko Kanaya
- "世界の食材のアクセッシビリティによる地域区分:おいしさの多様性は理解できるか？," 明日の食品産業, no.477, pp24-29, 2017.6.1
- Liu Kang, MD. ALTAF-UL-AMIN, 森田（平井）晶, 小野 直亮, 金谷 重彦
- "Big Data and Network Biology 2016," BioMed Research International, vol.2017, pp9432460, 26 Jan. 2017
- Shigehiko Kanaya, Md Altaf-Ul-Amin, Samuel K Kiboi, Farit Mochamad Afendi
- "Novel Approach to Classify Plants Based on Metabolite-Content Sililarity," Bio Med Research International, vol.2017, 9 Jan. 2017
- Kang Liu, Azian Azamimi Abdullah, Ming Huang, Takaaki Nishioka, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "Comparison of Clustering Methods in the Context of Chemical Structure Similarity Based Classification of VOCs," Procedia Chemistry, vol.20, pp40-44, 31 Dec. 2016
- Azian Azamimi Abdullah, Md Altaf-Ul-Amin, Naoaki Ono, Nurlisa Yusuf, Ammar Zakaria, Takaaki Nishioka, Shigehiko Kanaya
- "Finding an appropriate equation to measure similarity between binary vectors: case studies on Indonesian and Japanese herbal medicines," Bio Med Central Bioinformatics, Dec. 2016
- Sony Hartono Wijaya, Farit Mochamad Afendi, Irmanida Batubara, Latifah K. Darusman, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "多変量解析法にもとづいた日本語版中医体質調査表(CCMQ-J)における各質問間相関の評価ならびにBMI、年齢の推定モデルの構築," 日本補完代替医療学会誌, vol.13, no.2, pp43-56, 2016.7.11
- 山森 明弘, 許 鳳浩, 渡辺 知幸, 黄 銘, 小野 直亮, 佐藤 哲大, 阿部 哲朗, 上馬場 和夫, 川端 克司, 今西 勁峰, MD. ALTAF-UL-AMIN, 朱 燕波, 戴 昭宇, 王 琦, 金谷 重彦, 太田 富久, 鈴木 信孝
- "Comparison of Clustering Methods in the Context of Chemical Structure Similarity Based Classification of VOCs," Elsevier, Procedia Chemistry, Jul. 2016
- Azian Azamimi Abdullah, MD. ALTAF-UL-AMIN, Naoaki Ono, Nurlisa Yusuf, Ammar Zakaria, Takaaki Nishioka, Shigehiko Kanaya
- "Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles," Journal of biomedical informatics, vol.61, pp194-202, 30 Jun. 2016
- Nelson Kibinge, Naoaki Ono, Masafumi Horie, Tetsuo Sato, Tadao Sugiura, MD. ALTAF-UL-AMIN, Akira Saito, Shigehiko Kanaya
- "Collaboration among several different academic and industrial fields; Cutting Edge Data Science," 日本化学会情報化学部会誌, vol.34, no.2, pp29, 30 May. 2016
- Shigehiko Kanaya, MD. ALTAF-UL-AMIN
- "Needs and Prospects of International Collaboration in the Area of Big Data Biology," 日本化学会情報化学部会誌, vol.34, pp32, 30 May. 2016
- MD. ALTAF-UL-AMIN, Mohammad Imama Hasan Bin Asad
- "Utilization of KNApSAcK Family Databases for Developing Herbal Medicine Systems," Journal of Computer Aided Chemistry, vol.17, pp1-7, 30 May. 2016
- Sony Hartono Wijaya, Yuki Tanaka, MD. ALTAF-UL-AMIN, Aki Hirai Morita, Farit Mochamad Afendi, Irmanida Batubara, Naoaki Ono, Latifah K. Darusman, Shigehiko Kanaya
- "Big data and network biology 2015," BioMed research international, vol.2015, 1 Nov. 2015
- Shigehiko Kanaya, MD. ALTAF-UL-AMIN, Samuel K Kiboi, Farit Mochamad Afendi
- "A Glimpse to Background and Characteristics of Major Molecular Biologican Networks," Bio Med Research International, vol.2015, Aug. 2015
- MD. ALTAF-UL-AMIN, Tetsuo Katsuragi, Tetsuo Sato, Shigehiko Kanaya
- "Development and Mining of a Volatile Organic Compound Database," BioMed Research International, vol.2015, Jun. 2015
- Azian Azamimi Abdullah, MD. ALTAF-UL-AMIN, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, Aki Hirai Morita, Tetsuo Katsuragi, Ai Muto, Takaaki Nishioka, Shigehiko Kanaya
- "Targeted Integration of RNA-Seq and Metabolite Data to Elucidate Curcuminoid Biosynthesis in Four Curcuma Species," Plant and Cell Physiology, Jan. 2015
- L.Donghan, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, MD. ALTAF-UL-AMIN, D. Ohta, H.Suzuki, M.Arita, K. Tanaka, Z. Ma, Shigehiko Kanaya
- "Clustering of 3D-Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities," Molecular Informatics, vol.33, pp790-801, Nov. 2014
- Y. Ohtana, AA Abdullah, MD. ALTAF-UL-AMIN, M Huang, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, H. Horai, Y. Nakazawa, A.H.Morita, K. Lange, N.Kibinge, T.Katsuragi, T.Shirai, Shigehiko Kanaya
- "Clustering of 3D‐Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities," Molecular Informatics, Nov. 2014
- Yuki Ohtana,, Azian Azamimi Abdullah, MD. ALTAF-UL-AMIN, Ming Huang, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, Hisayuki Horai, Yukiko Nakamura, Aki Morita, Klaus W. Lange, Nelson K. Kibinge, Tetsuo Katsuragi, Tsuyoshi Shirai, Shigehiko Kanaya
- "Big Data and Network Biology," BioMed Research international 2014, Jun. 2014
- Shigehiko Kanaya, MD. ALTAF-UL-AMIN, SK Kiboi, FM. Afendi
- "Integration of Residue Attributes for Sequence Diversity Characterization of Terpenoid Enzymes," Bio Med Research International, vol.2014, 11 May. 2014
- Nelson Kibinge, Shun Ikeda, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "Systems Biology in the Context of Big Data and Networks," Bio Med Research International, ppID428570, May. 2014
- MD. ALTAF-UL-AMIN, Farit Mochamad Afendi, Samuel Kuria Kiboi, Shigehiko Kanaya
- "Supervised Clustering Based on DPClusO: Prediction of Plant-Disease Relations Using Jamu Formulas of KNApSAcK Database," Bio Med Research International, vol.2014, Apr. 2014
- Sony Hartono Wijaya, Husnawati Husnawati, Farit Mochamad Afendi, Irmanida Batubara, Latifah K. Darusman, MD. ALTAF-UL-AMIN, Tetsuo Sato, Naoaki Ono, Tadao Sugiura, Shigehiko Kanaya
- "An Unsupervised Approach to Predict Functional Relations between Genes Based on Expression Data," Bio Med Research International, vol.2014, 31 Mar. 2014
- MD. ALTAF-UL-AMIN, Tetsuo Katsuragi, Tetsuo Sato, Naoaki Ono, Shigehiko Kanaya
- "KNApSAcK Metabolite Activity Database for Retrieving the Relationships Between Metabolites and Biological Activities," Plant and Cell Physiology, vol.55, ppe7(1)-e7(9), 19 Feb. 2014
- Yukiko Nakamura, Farit Mochamad Afendi, Aziza Kawsar Parvin, Naoaki Ono, Ken Tanaka, Aki Hirai Morita, Tetsuo Sato, Tadao Sugiura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "Multivariate Analysis of Analytical Chemistry Data and Utility of the KNApSAcK Family Database to understand Metabolic Diversity in Medicinal Plants," Biotechnology for Medicinal Plants, pp413-438, Aug. 2013
- T. Okada, MD. ALTAF-UL-AMIN, A. Katoh, A. Hirai, Shigehiko Kanaya
- "Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK Motorcycle database," Plant and Cell Physiology, vol.54, no.5, pp711-727, Apr. 2013
- Shun Ikeda, Takashi Abe, Yukiko Nakamura, Nelson Kibinge, Aki Hirai Morita, Atsushi Nakatani, Naoaki Ono, Toshimichi Ikemura, Kensuke Nakamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "料理のオミックス 食材からみえてくる雑煮とレトルト・カレーの構築原理," Foods & Food Ingredients Journal of Japan, vol.218, no.1, pp43-60, 2013.4
- 桂樹 哲雄, 小野 直亮, 森田（平井） 晶, 中村 由紀子, MD. ALTAF-UL-AMIN, 金谷 重彦
- "Cuisine Omics: Fundamental Structures of Zouni and Retortable Pouched Pack of Curry Unveiled by Multivariate Analysis Based on Food Ingredients," Foods and Food Ingredients Journal of Japan, vol.218, no.1, pp43-60, Mar. 2013
- Tetsuo Katsuragi, Naoaki Ono, Aki Hirai-Morita, Yukiko Nakamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "SS-m PMG and SS-GA: Tools for Finding Pathways and Dynamic Simulation of Metabolic Networks," Plant and Cell Physiology, vol.54, no.5, pp728-739, Mar. 2013
- Tetsuo Katsuragi, Naoaki Ono, Keiichi Yasumoto, MD. ALTAF-UL-AMIN, Masami Y.Hirai, Kansuporn Sriyudthsak, Yuji Sawada, Yui Yamashita, Yukako Chiba, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Fumihide Shiraishi, Shigehiko Kanaya
- "Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology," Computational and Structural Biotechnology Journal , vol.4, no.5, ppe201301010, Jan. 2013
- Farit M. Afendi, Naoaki Ono, Yukiko Nakamura, Kensuke Nakamura, Latifah K. Darusman, Nelson Kibinge, Aki Hirai Morita, Ken Tanaka, Hisayuki Horai, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "Efficacy Prediction of Jamu Formulations by PLS Modeling," Current Computer-Aided Drug Design, vol.9, no.4, pp46-59, 2013
- Farit M. Afendi, Latifah K. Darusman, Aki Hirai Morita, MD. ALTAF-UL-AMIN, Hiroki Takahashi, Kensuke Nakamura, Ken Tanaka, Shigehiko Kanaya
- "KNApSAcK-3D: A Three-Dimensional Structure Database of Plant Metabolites," Plant Cell Physiol., vol.54, no.2, ppe4(1-8), 2013
- Kensuke Nakamura, Naoki Shimura, Yuuki Otabe, Aki Hirai-Morita, Yukiko Nakamura, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "Systems Biology Approaches and Metabolomics for Understanding Japanese Traditional Kampo Medicine," Current Pharmacogenomics and Personalized Medicine, vol.10, no.2, pp111-124, Jun. 2012
- Mochamad Afendi,Farit, Katsuragi, Tetsuo, Kato, Akira, Nishihara, Noritaka, Nakamura , Kensuke, Nakamura, Yukiko, Tanaka, Ken, Hirai Morita, Aki, MD. ALTAF-UL-AMIN, Takahashi, Hiroki, Shigehiko Kanaya
- "Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes," Gene, vol.503, pp56-64, Apr. 2012
- Masayoshi Wada, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Kensuke Nakamura, Masami Y. Hirai, Daisaku Ohta, Shigehiko Kanaya
- "PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset," BMC Systems Biology, vol.6, ppS2-S7, 4 Mar. 2012
- Shingo Kikugawa, Kensaku Nishikata, Katsuhiko Murakami, Yoshiharu Sato, Mami Suzuki, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Tadashi Imanishi
- "Partitioning a PPI Network into Overlapping Modules Constrained by High-Density and Periphery Tracking," ISRN Biomathematics, vol.2012, Mar. 2012
- MD. ALTAF-UL-AMIN, Masayoshi Wada, Shigehiko Kanaya
- "KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research," Plant and Cell Physiology, vol.53, no.2, pp1-12, Feb. 2012
- Farit Mochamad Afendi, Taketo Okada, Mami Yamazaki, Aki Hirai-Morita, Yukiko Nakamura, Kensuke Nakamura, Shun Ikeda, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Latifah K. Darusman, Kazuki Saito, Shigehiko Kanaya
- "A Bootstrapping Approach for Investigating the Consistency of Assignment of Plants to Jamu Effi," Malaysian Journal of Mathematical Sciences, vol.6, no.2, pp147-164, 2012
- Farit Mochamad Afendi, Latifah K Darusman, Masato Fukuyama, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "A FOUR-CLADE PHYLOGENETIC ANALYSIS OF PLASMODIUM, TRYPANPANOSOMA, LEISHMANIA AND MOSQUITO GENERA: LATERAL GENE TRANSFER OR CONVERGENT EVOLUTION," RESEARCH COMMUNICATIONS IN Biochemistry and Cell & Molecular Biology, 2012
- Nelson Kibinge, Shun Ikeda, Kensuke Nakamura, Farit Afendi, MD. ALTAF-UL-AMIN, Naoaki Ono, Shigehiko Kanaya
- "Sequence-specific error profile of Illumina sequencers ," Nucleic Acids Res., vol.May 16, ppgkr344, 16 May. 2011
- Kensuke Nakamura, Taku Oshima, Takuya Morimoto, Shun Ikeda, Hirofumi Yoshikawa, Yuh Shiwa, Shu Ishikawa, Margaret C. Linak, Aki Hirai, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Naotake Ogasawara, Shigehiko Kanaya
- "Species-Metabolite Relation Database KNApSAcK and Its Multifaceted Retrieval System, KNApSAcK Family," Handbook of Systems Toxicology, vol.1, pp291-297, May. 2011
- Hiroki Takahashi, Aki Hirai, Masayuki Shojo, Kaori Matsuda, Aziza Kawsar Parvin, Hiroko Asahi, Kensuke Nakamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
- "Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach," OMICS JIB, Sep. 2010
- Hiroki Takahashi, Ryoko Morioka, Ryosuke Ito, Taku Oshima, MD. ALTAF-UL-AMIN, Naotake Ogasawara, Shigehiko Kanaya
- "Metabolomics of Medicinal Plants: The Importance of Multivariate Analysis of Analytical Chemistry Data," Current Computer-Aided Drug Design, vol.6, 2010
- Taketo Okada, Farit Mochamad Afendi, MD. ALTAF-UL-AMIN, Hiroki Takahashi, Kensuke Nakamura, Shigehiko Kanaya
- "代謝反応経路をいかに予測するか？," 日本化学会情報化学部会誌, vol.27, pp41-43, 2009.8
- 田中 健一, 高橋 弘喜, 平井 晶, MD. ALTAF-UL-AMIN, 金谷 重彦
- "KNApSAcK gene classification system for Arabidopsis thaliana: Comparative genomic analysis of unicellular to seed plants," Plant Biotechnology, vol.26, pp509-516, 2009
- Hiroki Takahashi, Mai Kawazoe, Masayoshi Wada, Aki Hirai, Kensuke Nakamura, MD. ALTAF-UL-AMIN, Yuji Sawada, Masami Yokota Hirai, Shigehiko Kanaya
- "MetalMine: a database of functional metal-ion-binding sites in proteins.," Plant Biotechnology, vol.26, pp517-521, 2009
- Kensuke Nakamura, Aki Hirai, MD. ALTAF-UL-AMIN, Hiroki Takahashi
- "Metabolic pathway prediction based on inclusive relation between cyclic substructures.," Plant Biotechnology, vol.26, pp459-468, 2009
- Kenichi Tanaka, Kensuke Nakamura, Tamio Saito, Hiroyuki Osada, Aki Hirai, Hiroki Takahashi, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
- "Predicting conformation of protein complexes by determining statistically significant domain-domain interactions.," Plant Biotechnology, vol.26, pp495-501, 2009
- Kensaku Nishikata, Masayoshi Wada, Hiroki Takahashi, Kensuke Nakamura, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
- "ESTIMATION METHODOLOGY OF SUBSTRATE-PRODUCT PAIRS BASED ON REACTION RULES OF ENZYMES USING KNAPSACK DB," Jul. 2008
- Shigehiko Kanaya, Ken-ichi Tanaka, Hiroki Takahashi, Yoko Shinbo, MD. ALTAF-UL-AMIN, Hiroko Asahi, Atsushi Fukushima, Aki Hirai, Kazuki Saito, Daisaku Ohta, Daisuke Shibata
- "Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry," Analytical Bioanalytical Chemistry, Jun. 2008
- Hiroki Takahashi, Kosuke Kai, Shimbo Yoko, Kenich Tanaka, Daisaku Ohta, Taku Oshima, MD・ALTAF-UL-AMIN, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
- "The entire organization of transcription units on the Bacillus subilis genome," BMC Genomics, vol.8, pp197.1, 28 Jun. 2007
- Hirokazu Kobayashi, Joe Akitomi, Nobuyuki Fujii, Md.Altaf-Ul-Amin, Kazuo Kobayashi, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
- "Development and implementation of an algorithm for detection of protein complexes in large interaction networks," BMC Bioinformatics, vol.7, no.2006, pp207.1-207.13, 14 Apr. 2006
- MD・ALTAF-UL-AMIN, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya
- "Elucidating conservation of genes in multiple genomes based on graphs configured by bidirectional best-hit relationships," IPSJ Transactions on Bioinformatics, vol.1, no.No.SIG17 (TBIO1), pp1-11, 2006
- Hijiri Maeno, MD・ALTAF-UL-AMIN, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
- "Comparison of protein complexes predicted from PPI networks by DPClus and Newman clustering algorithms," IPSJ Transactions on Bioinformatics, vol.47, no.SIG17 (TBIO 1), pp31-41, 2006
- Hisashi Tuji, MD・ALTAF-UL-AMIN, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya
- "DPClus: A density-periphery based graph clustering software mainly focused on detection of protein complexes in interaction networks," J. Comput. Aided Chem., vol.7, pp150-156, 2006
- Md.Altaf-Ul-Amin, Hisashi Tuji, Ken Kurokawa, Hiroko Asahi, Yoko Shinbo, Shigehiko Kanaya
- "Integrated data mining of transcriptome and metabolome based on BL-SOM," J. Comput. Aided Chem., vol.7, pp125-136, 2006
- Mitsuru Yano, Shigehiko Kanaya, Md.Altaf-Ul-Amin, Ken Kurokawa, Masami Yokota Hirai, Kazuki Saito
- "Bioinformatics tool for genomic era: A step towards the In silico experiments - focused on molecular cloning," J. Comput. Aided Chem., vol.7, pp102-115, 2006
- Akira Ohyama, Ken Kurokawa, Kyotetsu Enai, Hitohiro Saitoh, Shigehiko Kanaya, Md-Altaf-Ul-Amin, Naotake Ogasawara
- "Species-metabolite database (KNApSAcK): Elucidating diversity of flavonoids," J. Comput. Aided Chem., vol.7, pp94-101, 2006
- Yoko Shinbo, Shun-ichi Sagkagakuchi, Yukiko Nakamura, MD・ALTAF-UL-AMIN, Ken Kurokawa, Kimito Funatsu, Shigehiko Kanaya
- "Spherical SOM and arrangement of neurons using helix on sphere," IPSJ Trans. Math. Modelling and Its Applications, vol.47, pp56-60, 2006
- Hirokazu Nishio, MD・ALTAF-UL-AMIN, Ken Kurokawa, Shigehiko Kanaya
- "Global landscape of protein complexes in the yeast Saccharomyces cerevisiae," Nature, vol.440, pp637-643, 2006
- Nevan J. Krogan, (40 persons), MD・ALTAF-UL-AMIN, Shigehiko Kanaya, (8 persons), Andrew Emili, Jack F. Greenblatt
- "Large-scale identification of protein-protein interaction of Escherichia coli K12," Genome Research, vol.16, no.6, pp686-691, 2006
- Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, (8 persons), MD・ALTAF-UL-AMIN, (7 persons), Shigehiko Kanaya, Chieko Wada, Hirotada Mori
- "KNApSAcK: A Comprehensive species-metabolite relationship," Biotechnol.Agric.Forestry, vol.57, pp165-181, 2006
- Yoko Shinbo, Yukiko Nakamura, MD・ALTAF-UL-AMIN, Hiroko Asahi, Ken Kurokawa, Masahiro Arita, Daisaku Ohta, Daisuke Shibata, Kazuki Saito, Shigehiko Kanaya
- "Prediction of Protein Functions Based on K-cores of Protein-Protein Interaction Networks and Amino Acid Sequences," 1. Genome Informatics Series No. 14, ISSN:0919-9454, pp498-499, Dec. 2003
- Md. Altaf-Ul-Amin, Kensaku Nishikata, Toshihiro Koma, Teppei Miyasato, Yoko Shinbo, Md. Arifuzzaman, Chieko Wada, Maki Maeda, Taku Oshima, Hirotada Mori, Shigehiko Kanaya
- "Design for two-pattern testability of controller-data path circuits," IEICE Trans. on Information and Systems, vol.Vol. E86-D, no.No.6, pp1042-1049, Jun. 2003
- Md. Altaf-Ul-Amin, Satoshi Ohtake, Hideo Fujiwara
- "Design for two-pattern testability of controller-data path circuits," IEICE Trans. on Information and Systems, vol.Vol. E86-D, no.No.6, pp1042-1049, Jun. 2003
- Md. Altaf-Ul-Amin, Satoshi Ohtake, Hideo Fujiwara
- "Design for hierarchical two-pattern testability of data paths," IEICE Trans. on Information and Systems, vol.E85-D, no.6, pp975-984, Jun. 2002
- Md. Altaf-Ul-Amin, Satoshi Ohtake, Hideo Fujiwara
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