金谷　重彦

所属 データ駆動型サイエンス創造センター データ駆動型サイエンス創造センター、情報科学領域 AI応用情報学
職位 教授
学位
研究室 データサイエンス部門、計算システムズ生物学
研究キーワード
 KNApSAcK Family データベース, 二次代謝物データベース, システムズバイオロジ, ケモインフォマティクス, バイオインフォマティクス
研究分野
 情報通信 / 生命、健康、医療情報学 / Systems Biology of Plants and Human
研究室概要
学術論文
"Explainable deep-learning-based ischemia detection using hybrid O-15 H2O perfusion positron emission tomography and computed tomography imaging with clinical data," Journal of Nuclear Cardiology, vol.38, pp101889, Aug. 2024
Jarmo Teuho, Jussi Schultz, Riku Klén, Luis Eduardo, Juarez-Orozco, Juhani Knuuti, Antti Saraste, Naoaki Ono, Shigehiko Kanaya
[ doi:10.1016/j.nuclcard.2024.101889 ]
"Quantitative evaluation model of variable diagnosis for chest X-ray images using deep learning," PLOS Digital Health, vol.3, no.5, ppe0000460, Mar. 2024
Shota Nakagawa, Naoaki Ono, Yukichika Hakamata, Takashi Ishii, Akira Saito, Shintaro Yanagimoto, Shigehiko Kanaya
[ doi:10.1371/journal.pdig.0000460 ]
"Application of a Two-Dimensional Mapping-Based Visualization Technique: Nutrient-Value-Based Food Grouping," Nutrients , vol.15, pp5006, 4 Dec. 2023
Ryota Wakayama, Satoshi Takasugi, Keiko Honda, Shigehiko Kanaya
[ doi:10.3390/nu15235006 ]
"Information maximization-based clustering of histopathology images using deep learning," PLOS Digital Health, vol.2, no.12, ppe0000391, Dec. 2023
Mahfujul Islam Rumman, Naoaki Ono, Kenoki Ohuchida, MD. ALTAF-UL-AMIN, Alex Ming Huang, Shigehiko Kanaya
[ doi:10.1371/journal.pdig.0000391 ]
"On finding natural antibiotics based on TCM formulae," Methods, vol.214, pp35-45, Jun. 2023
Pei Gao, Nasution Ahmad Kamal, Shuo Yang, Zheng Chen, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1016/j.ymeth.2023.04.001 ]
"On QSAR-based cardiotoxicity modeling with the expressiveness-enhanced graph learning model and dual-threshold scheme," Frontiers in Physiology, vol.14, pp1156286, May. 2023
Huijia Wang, Guangxian Zhu, Leighton T Izu, Ye Chen-Izu, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.3389/fphys.2023.1156286 ]
"Automated sleep staging via parallel frequency-cut attention," IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol.31, pp1974-1985, Feb. 2023
Zheng Chen, Ziwei Yang, Lingwei Zhu, Wei Chen, Toshiyo Tamura, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.1109/TNSRE.2023.3243589 ]
"Sleep Staging Framework with Physiologically Harmonized Sub-Networks," Methods (Elsevier), Dec. 2022
Zheng Chen, Ziwei Yang, Dong Wang, Xin Zhu, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"Prediction of Potential Natural Antibiotics Plants Based on Jamu Formula Using Random Forest Classifier," Antibiotics, vol.11, no.9, Sep. 2022
Ahmad Kamal Nasution, Sony Hartono Wijaya, Pei Gao, Rumman Mahfujul Islam, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.3390/antibiotics11091199 ]
"Automated Sleep Staging via Parallel Frequency-Cut Attention," arxiv, vol.2022, Jul. 2022
Zheng Chen, Ziwei Yang, Lingwei Zhu, Wei Chen, Toshiyo Tamura, 小野　直亮, MD. ALTAF-UL-AMIN, 金谷　重彦
"Recent Trends in Computational Research on Diseases," Life, vol.12, 14 Mar. 2022
MD. ALTAF-UL-AMIN, 金谷　重彦, 小野　直亮, 黄　銘
"Classification of ischemia from myocardial polar maps in 15O–H2O cardiac perfusion imaging using a convolutional neural network," Scientific Reposts, vol.12, pp2839, 18 Feb. 2022
Jarmo Teuho, Jussi Schultz, Riku Klen, Juhani Knuuti, Antti Saraste, Naoaki Ono, Shigehiko Kanaya
[ doi:10.1038/s41598-022-06604-x ]
"Discussion of Cuffless Blood Pressure Prediction Using Plethysmograph Based on a Longitudinal Experiment: Is the Individual Model Necessary?," Life, vol.12, no.1, pp11, Dec. 2021
Koshiro Kido, Zheng Chen, Toshiyo Tamura, Wei Chen, 小野　直亮, Masachika Takeuchi, MD. ALTAF-UL-AMIN, 金谷　重彦
"Evaluation of intercellular lipid lamellae in the stratum corneum by polarized microscopy," Skin Research & Technology, vol.28, no.3, pp391-401, 9 Nov. 2021
Naoki Asada, Ryo Morita, Rikae Kamiji, Mami Kuwajima, Masahiro Komorisono, Tatsuo Yamamura, Naoaki Ono, Shigehiko Kanaya, Shuichi Yoshikawa
[ doi:10.1111/srt.13109 ]
"Cheminformatics modeling of the correlation between Bupleurum Root-formula medicines and the Excess and Deficiency pattern in the diagnostic criteria of Sho in Kampo (traditional Japanese medicine) by non-targeted direct infusion mass spectrometry with machine learning," Journal of Natural Medicines, vol.acceptted, 29 Sep. 2021
Taketo Okada, Takao Namiki, Takayuki Tohge, Shigehiko Kanaya
[ doi:10.1007/s11418-021-01577-z ]
"Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach," life, vol.11, no.866, 23 Aug. 2021
Sony Hartono Wijaya, Farit Mochamad Afendi, Irmanida Batubara, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.3390/life11080866 ]
"Potential Arabidopsis thaliana glucosinolate genes identified from the coexpression modules using graph clustering approach," PeerJ, vol.9, 4 Aug. 2021
Sarahani Harun, Nor Afiqah-Aleng, Mohammad Bozlul Karim, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Zeti-Azura Mohamed-Hussein
[ doi:10.7717/peerj.11876 ]
"A system biology approach based on metabolic biomarkers and protein-protein interactions for identifying pathways underlying schizophrenia and bipolar disorder," Scientific reports, vol.11, no.1, pp1-11, 14 Jul. 2021
MD. ALTAF-UL-AMIN, Kazuhisa Hirose, Joao V. Nani, Lucas C. Porta, Ljubica Tasic, Shaikh Farhad Hossain, Alex Ming Huang, Naoaki Ono, Mirian A. F. Hayashi, Shigehiko Kanaya
[ doi:10.1038/s41598-021-93653-3 ]
"Image Analysis with Machine Learning Algorithms to Assist Breast Cancer Treatment," Vision, Sensing and Analytics: Integrative Approaches, pp327-355, Jun. 2021
Abu Asaduzzaman, Fadi N. Sibai, Shigehiko Kanaya, MD. ALTAF-UL-AMIN, Md. Jashim Uddin, Kishore K. Chidella, Parthib Mitra
"The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals," Computer Methods and Programs in Biomedicine, Jun. 2021
Zheng Chen, Naoaki Ono, Wei Chen, Toshiyo Tamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.1016/j.cmpb.2021.106102 ]
"A Real-Time Portable IoT System for Telework Tracking," Frontiers in Digital Health , vol.3, pp47, Jun. 2021
Zhang Yongxin, Chen Zheng, Tian Haoyu, Kido Koshiro, Naoaki Ono, Chen Wei, Tamura Toshiyo, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang
[ doi:10.3389/fdgth.2021.643042 ]
"Kinematics approach with neural networks for early detection of sepsis (KANNEDS)," BMC Medical Informatics and Decision Making, vol.21, no.1, pp1-11, 20 May. 2021
Marcio Freire Cruz, Naoaki Ono, Alex Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Carlos Arthur Mattos Teixeira Cavalcante
[ doi:10.1186/s12911-021-01529-3 ]
"Development of a biomarker database toward performing disease classification and finding disease interrelations," Database, 11 Mar. 2021
Shaikh Farhad Hossain, Alex Ming Huang, Naoaki Ono, Aki Morita, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1093/database/baab011 ]
"Embedding of Molecular Structure Using Molecular Hypergraph Variational Autoencoder with Metric Learning," Molecular Informatics, vol.2020, 8 Nov. 2020
Daiki Koge, Naoaki Ono, Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1002/minf.202000203 ]
"Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters," BMC Genomics, vol.2020, no.21, 1 Oct. 2020
Yuki Higa, Young-Soo Kim, MD. ALTAF-UL-AMIN, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya
[ doi:10.1186/s12864-020-06864-9 ]
"Databases for Natural Product Research," Comprehensive Natural Products III Chemistry and Biology, vol.7, pp222-238/, Sep. 2020
Shigehiko Kanaya, MD. ALTAF-UL-AMIN, Aki Morita Hirai, Alex Ming Huang, Naoaki Ono
[ doi:10.1016/B978-0-12-409547-2.14744-4 ]
"Systems Biology in the Context of Big Data, Statistics and Networks," Recent Advances in Biology, Sep. 2020
MD. ALTAF-UL-AMIN, Farit Mohamad Afendi, Shigehiko Kanaya
"Graph cluster approach in identifying novel proteins and significant pathways involved in polycystic ovary syndrome," Reproductive biomedicine online, vol.40, no.2, pp319, Feb. 2020
Afiqah-Aleng, N, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Mohamed-Hussein, Z. A.
"Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach," MBC Medical Genomics, vol.13, no.3, pp1-10, Feb. 2020
MD. ALTAF-UL-AMIN, M. B. Karim, P. Hu, Naoaki Ono, Shigehiko Kanaya
"Applications of Network Clustring in Natural Product Research," Comprehensive Natural Products III Chemistry and Biology, Jan. 2020
MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1016/B978-0-12-409547-2.14785-7 ]
"Relationships of Polymer Properties and Predicting Polymer Properties Based on Monomer Structure Information," Journal of Computer Aided Chemistry, vol.20, pp84-91, 26 Dec. 2019
Hitoshi Yamano, Tomoyuki Miyao, Naoaki Ono, Aki Morita, Shigehiko Kanaya
"Comprehensive Exploration of Target‐specific Ligands Using a Graph Convolution Neural Network," Molecular Informatics, 9 Dec. 2019
Yu Miyazaki, Naoaki Ono, Alex Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1002/minf.201900095 ]
"Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks," BMC bioinformatics, vol.20, no.1, pp380, Dec. 2019
Ryohei Eguchi, Naoaki Ono, Aki Hirai Morita, Tetsuo Katsuragi, Satoshi Nakamura, Alex Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
[ doi:10.1186/s12859-019-2963-6 ]
"Curcumin derivatives verify the essentiality of ROS upregulation in tumor suppression," Molecules, vol.24(22), pp4067-4067, 10 Nov. 2019
Ikuko Nakamae, Tsumoru Morimoto, Hiroki Shima, Masafumi Shionyu, Hisayo Fujiki, Noriko Yoneda-Kato, Takashi Yokoyama, Shigehiko Kanaya, Kiyomi Kakiuchi, Tsuyoshi Shirai, Edy Meiyanto, Jun-ya Kato
[ doi:10.3390/molecules24224067 ]
"Pentagamavunon-1 (PGV-1) inhibits ROS metabolic ensymes and suppresses tumor cell growth by including M phase (prometaphase) arrest and cell senescence," Scientific Report, vol.9, pp14867-14867, 16 Oct. 2019
Beni Lestari, Ikuko Nakamae, Noriko Yoneda-Kato, Tsumoru Morimoto, Shigehiko Kanaya, Takashi Yokoyama, Masafumi Shionyu, Tsuyoshi Shirai, Edy Meiyant, Jun-ya Kato
[ doi:10.1038/s41598-019-51244-3 ]
"Pentagamavunon-1 (PGV-1) inhibits ROS metabolic enzymes and suppresses tumor cell growth by inducing M phase (prometaphase) arrest and cell senescence. ," Scientific Reports, 4 Oct. 2019
Beni Lestari,, Ikuko Nakamae, Noriko Yoneda-Kato,, Tsumoru Morimoto, Shigehiko Kanaya, Takashi Yokoyama, Masafumi Shionyu, Tsuyoshi Shirai,, Edy Meiyanto, Jun-ya Kato
[ NAISTレポジトリ ] [ doi:10.1038/s41598-019-51244-3 ]
"Implementation of BiClusO and its comparison with other biclustering algorithms," Springer, Oct. 2019
Mohammad Bozlul Karim, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1007/s41109-019-0180-x ]
"クラウドソーシングを活用した日本全体のCCMQ-J問診票調査における最適グループ数とその体質特性," 日本補完代替医療学会誌, vol.16, no.2, pp105-112, 2019.10
佐藤 真梨子, 川崎 聡大, Alex Ming Huang, 許 鳳浩, 小野　直亮, 江口 遼平, MD. ALTAF-UL-AMIN, 德田（角谷） 佐紀, 渡辺 斉志, 村山 宣人, Satoshi Nakamura, 山口 栞, 田中 宏季, Shigehiko Kanaya, 朱 燕波, 戴 昭宇, 王 琦, 上馬塲 和夫, 鈴木 信孝
[ doi:10.1625/jcam.16.105 ]
"ヘルスケアにかかわる7種の質問票によるCCMQ-Jの体質の推定と解釈法," Japanese Journal of Complementary and Alternative Medicine, vol.16, no.2, pp79-93, Oct. 2019
Guang SHI, Hoko KYO, Toshihiro KAWASAKI, Shigehiko Kanaya, Mariko SATO, Saki TOKUDA-KAKUTANI, Hiroshi WATANABE, Norihito MURAYAMA, Minako OHASHI, MD. ALTAF-UL-AMIN, Naoaki Ono, Hiroki Tanaka, Satoshi Nakamura, Kazuo UEBABA, Nobutaka SUZUKI, Alex Ming Huang
[ doi:10.1625/jcam.16.79 ]
"Prediction of Metabolite Activities by Repetitive Clustering of the Structural Similarity Based Networks," Journal of Computer Aided Chemistry, vol.20, Oct. 2019
Nobutaka Wakamatsu, 黄　銘, 小野　直亮, MD. ALTAF-UL-AMIN, 金谷　重彦
[ doi:10.2751/jcac.20.76 ]
"Chemoinformatics Approach for Estimating Recovery Rates of Pesticides in Fruits and Vegetables," Journal of Computer Aided Chemistry, vol.20, pp92-103, 2019.10
Takeshi Serino, Yoshizumi Takigawa, Sadao Nakamura, 黄　銘, 小野　直亮, MD. ALTAF-UL-AMIN, 金谷　重彦
[ doi:10.2751/jcac.20.92 ]
"深層学習による肺癌組織画像の特徴抽出と遺伝子発現パターンとの相関解析," THE LUNG perspectives, vol.27, no.3, pp51-54, 2019.8.30
小野　直亮, 齋藤　朗, 黄　銘, MD. ALTAF-UL-AMIN, 金谷　重彦
"BiClusO:A novel biclustering approach andbits application to species-VOC relational data," IEEE/ACM transactions on computational biology and bioinformatics, 1 Jun. 2019
Mohammad Bozlul Karim, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
[ doi:10.1109/TCBB.2019.2914901 ]
"A Novel CNN-Based Framework for Classification of Signal Quality and Sleep Position from a Capacitive ECG Measurement," Sensors, vol.19, no.7, 11 Apr. 2019
Koshiro Kido, Toshiyo Tamura, Naoaki Ono, MD. ALTAF-UL-AMIN, Masaki Sekine, Shigehiko Kanaya, Alex Ming Huang
"On the determination of important plants for ayurvedic formulas in Bangladesh using unsupervised machine learning approach," Academia Journal of Medicinal Plants, vol.7, pp36-41, 24 Jan. 2019
Hossain M. Mofazzal, M. S. A. Gazi, M. Mahbub, A.A.P. Sayed, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
"Classification of lung adenocarcinoma transcriptome subtypes from pathological images using deep convolutional networks," International Journal of Computer Assisted Radiology and Surgery, no.s11548-018-1853-2, 29 Aug. 2018
Victor Andrew A. Antonio, Naoaki Ono, Akira Saito, Tetsuo Sato, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"An integrative network-based approach to identify novel disease genes and pathways:a case study in the context of inflammatory bowel disease," BMC　Bioinformatics, no.s12859-018-2251-x, 13 Jul. 2018
Ryohei Eguchi, Mohammand Bozlul Karim, Pingzhao Hu, Tetsuo Sato, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
"Molecular Components of Arabidopsis Intact Vacuoles Clarified with Metabolomic and Proteomic Analyses," Plant & Cell Physiology, vol.59, no.7, pp1353-1362, 12 Apr. 2018
Miwa Ohnishi, Aya Anegawa, Yuko Sugiyama, Kazuo Harada, Akira Oikawa, Yasumune Nakayama, Fumio Matsuda, Yukiko Nakamura, Ryosuke Sasaki, Chizuko Shichijo, Patrick G. Hatcher, Hidehiro Fukaki, Shigehiko Kanaya, Koh Aoki, Mami Yamazaki, Eiichiro Fukusaki, Kazuki Saito, Tetsuro Mimura
"Motion Correction for Extracellular Volume Fraction Mapping in Cardiac MRI," Advanced Biomedical Engineering, vol.7, pp82-87, Apr. 2018
Tetsuo Sato, Satoshi Kamikawa, Subaru Nakayama, Nobuyasu Ichinose, Shigehide Kuhara, Shigehiko Kanaya, Kotaro Minato, Cesar Nomura
"Metabolite-Content-Guided Prediction of Medicinal/Edible Properties in Plants for Bioprospecting," Current Research in Complementary & Alternative Medicine, ppCRCAM-130, Apr. 2018
Kang Liu, Aki H. Morita, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
"Data Intensive Study of Accessibility of Edible Species and Healthcare Across the Globe," 日本補完代替医療学会誌, vol.5, no.1, pp37-60, 26 Feb. 2018
Satoshi Watanabe, Hoko Kyo, Liu Kang, Ryohei Eguchi, MD. ALTAF-UL-AMIN, Aki (Hirai) Morita, Minako Ohashi, Naoaki Ono, Alex Ming Huang, Yanbo Zhu, Qi Wang, Zhaoyu Dai, Yukiko Nakamura, Klaus W. Lange, Kazuo Uebaba, Shintaro Hashimoto, Shigehiko Kanaya, Nobutaka Suzuki
"UC2 search: Using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics," Bioinformatics, ppbtx649.1-btx649.10, 12 Oct. 2017
Nozomu Sakurai, Takafumi Narise, Joon-Soo, Chang-Muk Lee, Chiaki Ikeda, Nayumi Akimoto, 金谷　重彦
"Oviposition inhibitor in umbelliferous medicinal plants for the common yellow swallowtail (Papilio machaon)," Journal of Natural Medicines, vol.in press, no.1861-0293, pp1-5, 7 Sep. 2017
Chisato Morino, Yusuke Morita, Kazuki Minami, Yuto Nishidono, Yoshitaka Nakashima, Rika Ozawa, Junji Takabayashi, Naoaki Ono, Shigehiko Kanaya, Takayuki Tamura, Yasuhiro Tezuka, Ken Tanaka
"123I-Labeled oxLDL is widely distributed throughout the whole body in mice," Nuclear Medicine and Molecular Imaging, Sep. 2017
Atsushi Nakano, Hidekazu Kawashima, Yoshinori Miyake, Tsutomu Zeniya, Akihide Yamamoto, Kazuhiro Koshino, Takashi Temma, Tetsuya Fukuda, Yoshiko Fujita, Akemi Kakino, Shigehiko Kanaya, Tatsuya Sawamura, Hidehiro Iida
"Classification of Alkaloid Compounds Based on Subring Skeleton (SRS) Profiling: On Finding Relationship of Compounds with Metabolic Pathways.," Journal of Computer Aided Chemistry, vol.18, pp58-75, 1 Aug. 2017
Ryohei Eguchi, Naoaki Ono, Hisayuki Horai, Md Altuf-Ul Amin, Aki Morita Hirai, Jun Kawahara, Shoji Kasahara, Tomoaki Endo, Shigehiko Kanaya
"Metabolomic Studies of Indonesian Jamu Medicines: Prediction of Jamu Efficacy and Identification of Important Metabolites.," Molecular Informatics, no.1868-1751, 6 Jul. 2017
Sony Hartono Wijaya, Irmanida Batubara, Takaaki Nishioka, Md. Altaf-Ul-Amin, Shigehiko Kanaya
"Data science in chemistry] Centrality Values of Yeast Proteins in a PPI Network Are Related to Their Essentiality and Functions.," Journal of Computer Aided Chemistry, vol.18, pp94-109, 13 Jun. 2017
Md Altaf-Ul-Amin, Sony Hartono Wijaya, Dodi Fitra Chandra, Shigehiko Kanaya
"食品のおいしさと健康にかかわるデータサイエンス~データ解析による健康、長寿とおいしい食品の関係について~," 明日の食品産業, no.477, pp23-23, 2017.6.1
金谷　重彦
"世界の食材のアクセッシビリティによる地域区分:おいしさの多様性は理解できるか？," 明日の食品産業, no.477, pp24-29, 2017.6.1
Liu Kang, MD. ALTAF-UL-AMIN, 森田（平井）晶, 小野　直亮, 金谷　重彦
"Data integration aids understanding of butterfly-host plant networks.," Scientific Reports, vol.7, pp43368, 6 May. 2017
Ai Muto-Fujita, Kazuhiro Takemoto, Shigehiko Kanaya, Takeru Nakazato, Toshiaki Tokimatsu, Natsushi Matsumoto, Mayo Kono, Yuko Chubachi, Katsuhisa Ozaki, Masaaki Kotera
"A Wearable Thermometry for Core Body Temperature Measurement and Its Experimental Verification.," IEEE journal of biomedical and health informatics, vol.21, no.3, pp708-714, 3 May. 2017
Ming Huang, Toshiyo Tamura, Zunyi Tang, Wenxi Chen, Shigehiko Kanaya
"Automatic Determination of Blood Flow Velocity in Brain Microvessels in a Cerebral Infarction Model Mouse Using a Small Implantable CMOS Imaging Device," Advanced Biomedical Engineering, vol.6, pp68-75, May. 2017
Tetsuo Sato, Haruka Dejima, Makito Haruto, Satoshi Kamikawa, Hitomi Nakazawa, Takashi Tokuda, Jun Ohta, Shigehiko Kanaya
"Co-ordinated Regulations of mRNA Synthesis and Decay during Cold Acclimation in Arabidopsis Cells.," Plant and Cell Physiology, vol.58, no.6, pp1090-1102, 21 Apr. 2017
Toshihiro Arae, Shiori Isai, Akira Sakai, Katsuhiko Mineta, asami Yokota Hirai, Yuya Suzuki, Shigehiko Kanaya, Junji Yamaguchi, Satoshi Naito, Yukako Chiba
"Data integration aids understanding of butterfly-host plant newworks," Scientific Reports, vol.7 , no.43368, pp1-14, 6 Mar. 2017
Ai Muto-Fujita, Kazuhiro Takemoto, Shigehiko Kanaya, Takeru Nakazato, Toshiaki Tokimatsu, Natsushi Matsumoto, Mayo Kono, Yuko Chubachi, Katsuhisa Ozaki, Masaaki Kotera
"Ketogenic diets and Alzheimer’s disease.," Food Science and Human Wellness, vol.6, pp1-9, Mar. 2017
Klaus W Lange, Katharina M Lange, Ewelina Makulska-Gertruda, Yukiko Nakamura, Andreas Reissmann, Shigehiko Kanaya, Joachim Hauser
"Big Data and Network Biology 2016," BioMed Research International, vol.2017, pp9432460, 26 Jan. 2017
Shigehiko Kanaya, Md Altaf-Ul-Amin, Samuel K Kiboi, Farit Mochamad Afendi
"Novel Approach to Classify Plants Based on Metabolite-Content Sililarity," Bio Med Research International, vol.2017, 9 Jan. 2017
Kang Liu, Azian Azamimi Abdullah, Ming Huang, Takaaki Nishioka, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput m RNA sequencing," Genomics Data, vol.10, pp4-11, 31 Dec. 2016
Taketo Okada, Hironobu Takahashi, Yutaka Suzuki, Sumio Sugano, Masaaki Noji, Hiromichi Kenmoku, Masao Toyota, Shigehiko Kanaya, Nobuo Kawahara, Yoshinori Asakawa, Setsuko Sekita
"Comparison of Clustering Methods in the Context of Chemical Structure Similarity Based Classification of VOCs," Procedia Chemistry, vol.20, pp40-44, 31 Dec. 2016
Azian Azamimi Abdullah, Md Altaf-Ul-Amin, Naoaki Ono, Nurlisa Yusuf, Ammar Zakaria, Takaaki Nishioka, Shigehiko Kanaya
"Finding an appropriate equation to measure similarity between binary vectors: case studies on Indonesian and Japanese herbal medicines," Bio Med Central Bioinformatics, Dec. 2016
Sony Hartono Wijaya, Farit Mochamad Afendi, Irmanida Batubara, Latifah K. Darusman, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"Ketogenic diets and Alzheimer's disease," Food Science and Human Wellness, 24 Nov. 2016
Klaus W Lange, Katharina M Lange, Ewelina Makulska-Gertruda, Yukiko Nakamura, Andreas Reissmann, Shigehiko Kanaya, Joachim Hauser
"A Chair-based Unobtrusive Cuffless Blood Pressure Monitoring System Based on Pulse Arrival Time," IEEE Journal of Biomedical and Health Informatics, no.99, Oct. 2016
Zunyi Tang, Toshiyo Tamura, Masaki Sekine, Ming Huang, Wenxi Chen, Masaki Yoshida, Kaoru Sakatani, Hiroshi Kobayashi, Shigehiko Kanaya
"Critical involvement of environmental carbon dioxide fixation to drive wax ester fermentation in Euglena," PloS one, vol.11, no.9, ppe0162827, 26 Sep. 2016
Adchara Padermshoke, Takumi Ogawa, Kazuki Nishio, Masami Nakazawa, Masatoshi Nakamoto, Atsushi Okazawa, Shigehiko Kanaya, Masanori Arita, Daisaku Ohta
"多変量解析法にもとづいた日本語版中医体質調査表(CCMQ-J)における各質問間相関の評価ならびにBMI、年齢の推定モデルの構築," 日本補完代替医療学会誌, vol.13, no.2, pp43-56, 2016.7.11
山森　明弘, 許　鳳浩, 渡辺　知幸, 黄　銘, 小野　直亮, 佐藤　哲大, 阿部　哲朗, 上馬場　和夫, 川端　克司, 今西　勁峰, MD. ALTAF-UL-AMIN, 朱　燕波, 戴　昭宇, 王　琦, 金谷　重彦, 太田　富久, 鈴木　信孝
"Comparison of Clustering Methods in the Context of Chemical Structure Similarity Based Classification of VOCs," Elsevier, Procedia Chemistry, Jul. 2016
Azian Azamimi Abdullah, MD. ALTAF-UL-AMIN, Naoaki Ono, Nurlisa Yusuf, Ammar Zakaria, Takaaki Nishioka, Shigehiko Kanaya
"Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles," Journal of biomedical informatics, vol.61, pp194-202, 30 Jun. 2016
Nelson Kibinge, Naoaki Ono, Masafumi Horie, Tetsuo Sato, Tadao Sugiura, MD. ALTAF-UL-AMIN, Akira Saito, Shigehiko Kanaya
"非能動型呼吸運動訓練装置における在宅用定量的測定記録システムの研究開発," 医療機器学, vol.86, no.3, pp278-287, 2016.6.1
渡邉　琢朗, 服部　託夢, 前田　康治, 塚本　壮輔, 金谷　重彦, 戸畑　裕志
"Automatic Identification of the Cardiac Rest Period Using Template Updating for Magnetic Resonance Coronary Angiography," Advanced Biomedical Engineering, vol.5, pp26-31, Jun. 2016
Tetsuo Sato, Tomohisa Okada, Shigehide Kuhara, Kaori Togashi, Shigehiko Kanaya, Kotaro Minato
"Collaboration among several different academic and industrial fields; Cutting Edge Data Science," 日本化学会情報化学部会誌, vol.34, no.2, pp29, 30 May. 2016
Shigehiko Kanaya, MD. ALTAF-UL-AMIN
"Systems Agronomy Collaboration between Japanese and Indonesia Agriculture Industries focused on Potato Cultivationa," 日本化学会情報化学部会誌, vol.34, no.2, pp53, 30 May. 2016
Sony Hartono Wijaya, Diky Indrawibawa, Sono Suharsono, Kenzo Nakamura, Keichi Nishijima, Hideshige Takagishi, Keiichi Takeuchi, Ryohei Eguchi, Shigehiko Kanaya
"Utilization of KNApSAcK Family Databases for Developing Herbal Medicine Systems," Journal of Computer Aided Chemistry, vol.17, pp1-7, 30 May. 2016
Sony Hartono Wijaya, Yuki Tanaka, MD. ALTAF-UL-AMIN, Aki Hirai Morita, Farit Mochamad Afendi, Irmanida Batubara, Naoaki Ono, Latifah K. Darusman, Shigehiko Kanaya
"Selective regulation of pyrethrin biosynthesis by the specific blend of would induced volatiles in Tanacetum cinerariifolium," Plant signaling & behavior, vol.11, no.4, ppe1149675, 2 Apr. 2016
Koji Sakamori, Naoaki Ono, Makoto Ihara, Hideyuki Suzuki, H Matsuura, Ken Tanaka, Daisaku Ohta, Shigehiko Kanaya, Kazuhiko Matsuda
"A Quantitative Measuringt System for an Incentive Breathing Exerciser," 医工学治療, vol.28, no.1, pp33-38, Mar. 2016
Takuro Watanabe, Takumu Hattori, Koji Maeda, Sosuke Tsukamoto, Hiroshi Tobata, Shigehiko Kanaya
"新技術と研究紹介-ビッグデータ・フード・サイエンス：料理レシピと世界の食品アクセスにおけるデータ・サイエンス," 明日の食品産業, pp33-44, 2016.3
平井（森田）晶, 西原　典孝, 大橋　美名子, 冨田　圭子, 小島　誠也, 大西　啓介, 稲村　真弥, 生島　早紀子, 佐藤　哲大, 小野　直亮, 黄　銘, 鈴木　優, 中村　哲, 加藤　博一, 金谷　重彦
"A Wearable Thermometry for Core Body Temperature Measurement and Its Experimental Verification," IEEE Journal of Biomedical and Health Informatics, 23 Feb. 2016
Alex Ming Huang, Toshiyo Tamura, Z Tang, W Chen, Shigehiko Kanaya
"Informatics framework of traditional Sino-Japanese medicine (Kampo) unveiled by factor analysis," Journal of natural medicines, pp107-114, Jan. 2016
Taketo Okada, Farit Mochamad Afendi, Mami Yamazaki, Kaori Nakahashi Chida, Makoto Suzuki, Rika Kawai, Miyuki Kim, Takao Namiki, Shigehiko Kanaya, Kazuki Saito
"Time-dependent directional change in oligonucleotide composition found by big data analyses on zoonotic RNA viruses," GENE & GENETIC SYSTEMS, vol.90, no.6, pp393-393, 1 Dec. 2015
Toshimichi Ikemura, Yoshiko Wada, Yuki Iwasaki, Kennosuke Wada, Shigehiko Kanaya
"Big data and network biology 2015," BioMed research international, vol.2015, 1 Nov. 2015
Shigehiko Kanaya, MD. ALTAF-UL-AMIN, Samuel K Kiboi, Farit Mochamad Afendi
"Metabolomic Characterization of a Low Phytic Acid and High Anti-oxidative Cultivar of Turmeric," Natural Product Communications, vol.10, pp1-6, Nov. 2015
Ken Tanaka, Masanori Arita, Donghan Li, Naoaki Ono, Yasuhiro Tezuka, Shigehiko Kanaya
"Structural Optimization of a Wearable Deep Body Thermometer:From Theoretical Simulation to Experimental Verification," Journal of Sensors, vol.501, Sep. 2015
Ming Huang, Toshiyo Tamura, Zunyi Tang, Wenxi Chen, Shigehiko Kanaya
"Dietary seaweeds and obesity," Food Science and Human Wellness, vol.4, no.3, pp87-96, Sep. 2015
Klaus W. Lange, Joachim Hauser, Yukiko Nakamura, Shigehiko Kanaya
"A Glimpse to Background and Characteristics of Major Molecular Biologican Networks," Bio Med Research International, vol.2015, Aug. 2015
MD. ALTAF-UL-AMIN, Tetsuo Katsuragi, Tetsuo Sato, Shigehiko Kanaya
"ビッグ・データ・バイオロジー　医食同源と生態学の体系化に向けて," 化学と生物, vol.53, no.9, pp600-607, 2015.8
平井（森田）晶, 中村　由紀子, 黄　銘, 佐藤　哲大, 小野　直亮, 西岡　孝明, 白井　剛, 金谷　重彦
"Development and Mining of a Volatile Organic Compound Database," BioMed Research International, vol.2015, Jun. 2015
Azian Azamimi Abdullah, MD. ALTAF-UL-AMIN, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, Aki Hirai Morita, Tetsuo Katsuragi, Ai Muto, Takaaki Nishioka, Shigehiko Kanaya
"The dynamic　balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress," Journal of the Royal Society Interface, vol.12, no.106, pp20150069, 6 May. 2015
Hiroki Takahashi, Taku Oshima, Jon L Hobman, Neil Doherty, Selina R Clayton, Mudassar Iqbal, Philip J Hill, Toru Tobe, Naotake Ogasawara, Shigehiko Kanaya, Dov J Stekel
"Metabolonote: A wiki-based database for managing hierarchical metadata of metabolome analyses," Frontiers in bioengineering and biotechnology, vol.3, Apr. 2015
Takeshi Ara, Mitsuo Enomoto, Masanori Arita, Chiaki Ikeda, Kota Kera, Manabu Yamada, Takaaki Nishioka, Tasuku Ikeda, Yoshito Nihei, Daisuke Shibata, Shigehiko Kanaya, Nozomu Sakurai
"Quantitative analysis of fall risk using TUG test," Computer methods in biomechanics and biomedical engineering, vol.18, no.4, pp426-437, Mar. 2015
Nor Aini Zakaria, Yutaka Kuwae, Toshiyo Tamura, Kotaro Minato, Shigehiko Kanaya
"Evaluation of structual and thermophysical effects on the measurement accuracy of deep body thermometers based on dual-heat-flux method," Journal of thermal biology, vol.47, pp26-31, Jan. 2015
M Huang, T. Tamura, W. Chen, Shigehiko Kanaya
"Targeted Integration of RNA-Seq and Metabolite Data to Elucidate Curcuminoid Biosynthesis in Four Curcuma Species," Plant and Cell Physiology, Jan. 2015
L.Donghan, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, MD. ALTAF-UL-AMIN, D. Ohta, H.Suzuki, M.Arita, K. Tanaka, Z. Ma, Shigehiko Kanaya
"A U-system approach for predicting metablic behaviors and responses based o an alleged metabolic reaction network," BMC Systems Biiology , vol.8, no.Suppl 5, ppS4, Dec. 2014
K. Sriyudthsak, Y.Sawada, Y. Chiba, Y. Yamashita, Shigehiko Kanaya, H. Onouchi, T. Fujiwara, S. Naito, E.Voit, F. Shiraishi, M. Y. Hirai
"Clustering of 3D-Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities," Molecular Informatics, vol.33, pp790-801, Nov. 2014
Y. Ohtana, AA Abdullah, MD. ALTAF-UL-AMIN, M Huang, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, H. Horai, Y. Nakazawa, A.H.Morita, K. Lange, N.Kibinge, T.Katsuragi, T.Shirai, Shigehiko Kanaya
"Characterization of ultradian and circadian rhythms of core body temperature based on wavelet analysis," Engineering in Medicine and Biology Society , Nov. 2014
M. Huang, T. Tamura, W. Chen, K. Kitamura, T. Nemoto, Shigehiko Kanaya
"Integrated network analysis and effective tools in plant systems biology," Frontiers in plant science 5, Nov. 2014
A. Fukushima, Shigehiko Kanaya, K. NIshida
"Clustering of 3D‐Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities," Molecular Informatics, Nov. 2014
Yuki Ohtana,, Azian Azamimi Abdullah, MD. ALTAF-UL-AMIN, Ming Huang, Naoaki Ono, Tetsuo Sato, Tadao Sugiura, Hisayuki Horai, Yukiko Nakamura, Aki Morita, Klaus W. Lange, Nelson K. Kibinge, Tetsuo Katsuragi, Tsuyoshi Shirai, Shigehiko Kanaya
"KEGGscape:a Cytoscape app for pathway data integration," F1000Research3, Jul. 2014
K. Nishida, K. Ono, Shigehiko Kanaya, K. Takahashi
"Polyunsaturated Fatty Acids in the Treatment of Attention Deficit Hyperacitivity Disorder," Functional Foods in Health and Disease 2014, vol.4, no.6, pp245-253, Jun. 2014
Klaus W. Lange, Joachim Hauser, Shigehiko Kanaya, Ivo Kaunzinger, Katharina M. Lange, Ewelina Makulska-Gertruda, Yukiko Nakamura, Thomas A. Sontag, Lara Tucha
"血液透析における血管内容積のシミュレーション," 生体医工学, vol.52, no.1, pp42-49, 2014.6
布江田　友里, 片山　俊郎, 佐藤　哲大, 大山　俊治, 金谷　重彦, 湊　小太郎
"Big Data and Network Biology," BioMed Research international 2014, Jun. 2014
Shigehiko Kanaya, MD. ALTAF-UL-AMIN, SK Kiboi, FM. Afendi
"Integration of Residue Attributes for Sequence Diversity Characterization of Terpenoid Enzymes," Bio Med Research International, vol.2014, 11 May. 2014
Nelson Kibinge, Shun Ikeda, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"Fall-Risk Classification of the Timed Up-and-Go Test with Principle Component Analysis," International Journal of Neurorehabilitation, vol.1, May. 2014
Noriko Tanaka, Nor Aini Zakaria, Nelson Kipchirchir Kibinge, Shigehiko Kanaya, Toshiyo Tamura, Masaki Yoshida
"Systems Biology in the Context of Big Data and Networks," Bio Med Research International, ppID428570, May. 2014
MD. ALTAF-UL-AMIN, Farit Mochamad Afendi, Samuel Kuria Kiboi, Shigehiko Kanaya
"A Novel Bioinformatics Method for Efficient Knowledge Discovery by BLSOM from Big Genomic Sequence Data," Bio Med Research International, 3 Apr. 2014
Yu Bai, Yuki Iwasaki, Shigehiko Kanaya, Yue Zhao, Toshimichi Ikemura
"Supervised Clustering Based on DPClusO: Prediction of Plant-Disease Relations Using Jamu Formulas of KNApSAcK Database," Bio Med Research International, vol.2014, Apr. 2014
Sony Hartono Wijaya, Husnawati Husnawati, Farit Mochamad Afendi, Irmanida Batubara, Latifah K. Darusman, MD. ALTAF-UL-AMIN, Tetsuo Sato, Naoaki Ono, Tadao Sugiura, Shigehiko Kanaya
"Exploration of polar lipid accumulation profiles in Euglena gracilis using LipidBlast, an MS/MS spectral library constructed in silico," Bioscience, biotechnology and biochemistry, vol.78, no.1, pp14-18, Apr. 2014
T. Ogawa, T. Furuhashi, A. Okazawa, R. Nakai, M. Nakazawa, T. Kind, O. Fiehn, Shigehiko Kanaya, M.Arita, D. Ohta
"An Unsupervised Approach to Predict Functional Relations between Genes Based on Expression Data," Bio Med Research International, vol.2014, 31 Mar. 2014
MD. ALTAF-UL-AMIN, Tetsuo Katsuragi, Tetsuo Sato, Naoaki Ono, Shigehiko Kanaya
"KNApSAcK Metabolite Activity Database for Retrieving the Relationships Between Metabolites and Biological Activities," Plant and Cell Physiology, vol.55, ppe7(1)-e7(9), 19 Feb. 2014
Yukiko Nakamura, Farit Mochamad Afendi, Aziza Kawsar Parvin, Naoaki Ono, Ken Tanaka, Aki Hirai Morita, Tetsuo Sato, Tadao Sugiura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"Quantitative Analysis of Fallrisk using TUG Test," Computer Methods in Biomechanics and Biomedical Engineering, 21 Aug. 2013
Nor Aini Zakaria, Yutaka Kuwae, Toshiyo Tamura, Kotaro Minato, Shigehiko Kanaya
"Localized cell stiffness measurement using axial movement of an optically trapped microparticle," Journal of Biomedical Optics, vol.18, no.11, pp111411, 9 Aug. 2013
Mary-Clare Dy, Shigehiko Kanaya, Tadao Sugiura
"Multivariate Analysis of Analytical Chemistry Data and Utility of the KNApSAcK Family Database to understand Metabolic Diversity in Medicinal Plants," Biotechnology for Medicinal Plants, pp413-438, Aug. 2013
T. Okada, MD. ALTAF-UL-AMIN, A. Katoh, A. Hirai, Shigehiko Kanaya
"Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK Motorcycle database," Plant and Cell Physiology, vol.54, no.5, pp711-727, Apr. 2013
Shun Ikeda, Takashi Abe, Yukiko Nakamura, Nelson Kibinge, Aki Hirai Morita, Atsushi Nakatani, Naoaki Ono, Toshimichi Ikemura, Kensuke Nakamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"A Computational and Experimental Approach Reveals that the 5′-Proximal Region of the 5′-UTR has a Cis-Regulatory Signature Responsible for Heat Stress-Regulated mRNA Translation in Arabidopsis," Plant and Cell Physiology, vol.54, no.4, pp474-483, Apr. 2013
Hideyuki Matsuura, Shinya Takenami, Yuki Kubo, Kiyotaka Ueda, Aiko Ueda, Masatoshi Yamaguchi, Kazumasa Hirata, Taku Demura, Shigehiko Kanaya, Ko Kato
"料理のオミックス　食材からみえてくる雑煮とレトルト・カレーの構築原理," Foods & Food Ingredients Journal of Japan, vol.218, no.1, pp43-60, 2013.4
桂樹　哲雄, 小野　直亮, 森田（平井）　晶, 中村　由紀子, MD. ALTAF-UL-AMIN, 金谷　重彦
"Cuisine Omics: Fundamental Structures of Zouni and Retortable Pouched Pack of Curry Unveiled by Multivariate Analysis Based on Food Ingredients," Foods and Food Ingredients Journal of Japan, vol.218, no.1, pp43-60, Mar. 2013
Tetsuo Katsuragi, Naoaki Ono, Aki Hirai-Morita, Yukiko Nakamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"SS-m PMG and SS-GA: Tools for Finding Pathways and Dynamic Simulation of Metabolic Networks," Plant and Cell Physiology, vol.54, no.5, pp728-739, Mar. 2013
Tetsuo Katsuragi, Naoaki Ono, Keiichi Yasumoto, MD. ALTAF-UL-AMIN, Masami Y.Hirai, Kansuporn Sriyudthsak, Yuji Sawada, Yui Yamashita, Yukako Chiba, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Fumihide Shiraishi, Shigehiko Kanaya
"Improved production of secreted heterologous enzyme in Bacillus subtilis strain MGB874 via modification of glutamate metabolism and growth conditions," Microbial Cell Factories, vol.12, pp18.1-18.16, Feb. 2013
Kenji Manabe, Yasushi Kageyama, Takuya Morimoto, Eri Shimizu, Hiroki Takahashi, Shigehiko Kanaya, Katsutoshi Ara, Katsuya Ozaki, Naotake Ogasawara
"Improved production of secreted heterologous enzyme in Bacillus subtilis strain MGB874 via modification of glutamate metabolism and growth conditions," Microb Cell Fact, vol.12, no.1, pp18, Feb. 2013
Manabe, K, Kageyama, Y, Morimoto, T, Shimizu, E, Takahashi, H, Kanaya, S, Ara, K, Ozaki, K, Ogasawara, N.
"Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology," Computational and Structural Biotechnology Journal , vol.4, no.5, ppe201301010, Jan. 2013
Farit M. Afendi, Naoaki Ono, Yukiko Nakamura, Kensuke Nakamura, Latifah K. Darusman, Nelson Kibinge, Aki Hirai Morita, Ken Tanaka, Hisayuki Horai, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"A Computational and Experimental Approach Reveals that the 5'-proximal Region of the 5'-UTR Has a Cis-Regulatory Signature Responsible for Heat Stress-Regulated mRNA Translation in Arabidopsis.," Plant Cell Physiol. in press, Jan. 2013
Matsuura H, Takenami S, Kubo Y, Ueda K, Ueda A, Yamaguchi M, Hirata K, Demura T, Kanaya S, Ko Kato
"An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values," BIOINFORMATICS, vol.29, no.2, pp290-291, 2013
Nozomu Sakurai, Takeshi Ara, Shigehiko Kanaya, Yukiko Nakamura, Yoko Iijima, Mitsuo Enomoto, Takeshi Motegi, Koh Aoki, Hideyuki Suzuki, Daisuke Shibata
"Efficacy Prediction of Jamu Formulations by PLS Modeling," Current Computer-Aided Drug Design, vol.9, no.4, pp46-59, 2013
Farit M. Afendi, Latifah K. Darusman, Aki Hirai Morita, MD. ALTAF-UL-AMIN, Hiroki Takahashi, Kensuke Nakamura, Ken Tanaka, Shigehiko Kanaya
"KNApSAcK-3D: A Three-Dimensional Structure Database of Plant Metabolites," Plant Cell Physiol., vol.54, no.2, ppe4(1-8), 2013
Kensuke Nakamura, Naoki Shimura, Yuuki Otabe, Aki Hirai-Morita, Yukiko Nakamura, Naoaki Ono, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"オーム科学におけるデータベース構築とマイニング技術," 情報処理学会研究報告　MPS 数理モデル化と問題解決研究報告2012, vol.16, pp1-3, 2012.11
金谷　重彦
"Systems Biology Approaches and Metabolomics for Understanding Japanese Traditional Kampo Medicine," Current Pharmacogenomics and Personalized Medicine, vol.10, no.2, pp111-124, Jun. 2012
Mochamad Afendi,Farit, Katsuragi, Tetsuo, Kato, Akira, Nishihara, Noritaka, Nakamura , Kensuke, Nakamura, Yukiko, Tanaka, Ken, Hirai Morita, Aki, MD. ALTAF-UL-AMIN, Takahashi, Hiroki, Shigehiko Kanaya
"Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes," Gene, vol.503, pp56-64, Apr. 2012
Masayoshi Wada, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Kensuke Nakamura, Masami Y. Hirai, Daisaku Ohta, Shigehiko Kanaya
"PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset," BMC Systems Biology, vol.6, ppS2-S7, 4 Mar. 2012
Shingo Kikugawa, Kensaku Nishikata, Katsuhiko Murakami, Yoshiharu Sato, Mami Suzuki, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Tadashi Imanishi
"Partitioning a PPI Network into Overlapping Modules Constrained by High-Density and Periphery Tracking," ISRN Biomathematics, vol.2012, Mar. 2012
MD. ALTAF-UL-AMIN, Masayoshi Wada, Shigehiko Kanaya
"KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research," Plant and Cell Physiology, vol.53, no.2, pp1-12, Feb. 2012
Farit Mochamad Afendi, Taketo Okada, Mami Yamazaki, Aki Hirai-Morita, Yukiko Nakamura, Kensuke Nakamura, Shun Ikeda, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Latifah K. Darusman, Kazuki Saito, Shigehiko Kanaya
"A Bootstrapping Approach for Investigating the Consistency of Assignment of Plants to Jamu Effi," Malaysian Journal of Mathematical Sciences, vol.6, no.2, pp147-164, 2012
Farit Mochamad Afendi, Latifah K Darusman, Masato Fukuyama, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"Changes in mRNA Stability Associated with Cold Stress in Arabidopsis Cells," Plant & Cell Physiology, vol.54, no.2, pp180-194, 2012
Yukako Chiba, Katsuhiko Mineta, Masami Y.Hirai, Yuya Suzuki, Shigehiko Kanaya, Hiro Takahashi, Hitoshi Onouchi, Junji Yamaguchi, Satoshi Naito
"A FOUR-CLADE PHYLOGENETIC ANALYSIS OF PLASMODIUM, TRYPANPANOSOMA, LEISHMANIA AND MOSQUITO GENERA: LATERAL GENE TRANSFER OR CONVERGENT EVOLUTION," RESEARCH COMMUNICATIONS IN Biochemistry and Cell & Molecular Biology, 2012
Nelson Kibinge, Shun Ikeda, Kensuke Nakamura, Farit Afendi, MD. ALTAF-UL-AMIN, Naoaki Ono, Shigehiko Kanaya
"オミックス・プラットフォーム：バイオ・ビッグ・データに挑む," 生物工学会誌, vol.90, no.12, pp777-781, 2012
池田俊, 桂樹哲雄, 小野　直亮, 中谷淳至, 中村由紀子, 森田晶, 金谷　重彦
"AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS," BMC Bioinformatics, vol.12, pp259, Jun. 2011
Hiroki Takahashi, Takuya Morimoto, Naotake Ogasawara, Shigehiko Kanaya
"AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS," BMC Bioinformatics, vol.12, pp259, Jun. 2011
Takahashi, H, Morimoto, T, Ogasawara, N, Kanaya, S.
"Sequence-specific error profile of Illumina sequencers ," Nucleic Acids Res., vol.May 16, ppgkr344, 16 May. 2011
Kensuke Nakamura, Taku Oshima, Takuya Morimoto, Shun Ikeda, Hirofumi Yoshikawa, Yuh Shiwa, Shu Ishikawa, Margaret C. Linak, Aki Hirai, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Naotake Ogasawara, Shigehiko Kanaya
"Species-Metabolite Relation Database KNApSAcK and Its Multifaceted Retrieval System, KNApSAcK Family," Handbook of Systems Toxicology, vol.1, pp291-297, May. 2011
Hiroki Takahashi, Aki Hirai, Masayuki Shojo, Kaori Matsuda, Aziza Kawsar Parvin, Hiroko Asahi, Kensuke Nakamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya
"Sequence-specific error profile of Illumina sequencers," Nucleic Acids Res., vol.39, no.13, May. 2011
Kensuke Nakamura, Taku Oshima, Takuya Morimoto, Shun Ikeda, Hirofumi Yoshikawa, Yuh Shiwa, Shu Ishikawa, Margaret C. Linak, Aki Hirai, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Naotake Ogasawara, Shigehiko Kanaya
"Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach," OMICS, vol.15, no.1-2, pp15, Jan. 2011
Takahashi H, Morioka R, Ito R, Oshima T, Altaf-Ul-Amin M, Ogasawara N, Kanaya S
[ doi:10.1089/omi.2010.0074 ]
"Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation," Nuckeic Acids Res, vol.39, no.2, pp414, Jan. 2011
Chumsakul O, Takahashi H, Oshima T, Hishimoto T, Kanaya S, Ogasawara N, Ishikawa S
[ doi:10.1093/nar/gkq780 ]
"Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach," OMICS JIB, Sep. 2010
Hiroki Takahashi, Ryoko Morioka, Ryosuke Ito, Taku Oshima, MD. ALTAF-UL-AMIN, Naotake Ogasawara, Shigehiko Kanaya
"Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation," Nucleic Acids Res., Sep. 2010
Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
"MassBank: a public repository for sharing mass spectral data for life sciences," Journal of Mass Spectrometry, vol.45, no.7, Jul. 2010
Hisayuki Horai, Masanori Arita, Shigehiko Kanaya, Yoshito Nihei, Tasuku Ikeda, Kazuhiro Suwa, Yuya Ojima, Kenichi Tanaka, Satoshi Tanaka, Ken Aoshima, Yoshiya Oda, Yuji Kakazu, Miyako Kusano, Takayuki Tohge, Fumio Matsuda, Yuji Sawada, Masami Yokota Hirai, Hiroki Nakanishi, Kazutaka Ikeda, Naoshige Akimoto, Takashi Maoka, Hiroki Takahashi, Takeshi Ara, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Steffen Neumann, Takashi Iida, Ken Tanaka, Kimito Funatsu, Fumito Matsuura, Tomoyoshi Soga, Ryo Taguchi, Kazuki Saito, Takaaki Nishioka
"Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress.," OMICS JIB, vol.14, Jul. 2010
Strassburg, K, Walther, D., Hiroki Takahashi, Shigehiko Kanaya, Kopka, J
"Effect of the Sequence Context of the AUG Initiation Codon on the Rate of Translation in Dicotyledonous and Monocotyledonous Plant Cells.," J Biosci Bioeng, vol.109, no.2, pp170, Feb. 2010
Sugio, T, Matsuura, H, Matsui, T, Matsunaga, M, Nosho, T, Kanaya, S, Shinmyo, A., Kato, K.
[ doi:10.1016/j.jbiosc.2009.07.009 ]
"Effect of the Sequence Context of the AUG Initiation Codon on the Rate of Translation in Dicotyledonous and Monocotyledonous Plant Cells.," J Biosci Bioeng, vol.109, no.2, pp170, Feb. 2010
Sugio, T, Matsuura, H, Matsui, T, Matsunaga, M, Nosho, T, Kanaya, S, Shinmyo, A., Kato, K.
[ doi:10.1016/j.jbiosc.2009.07.009 ]
"Metabolomics of Medicinal Plants: The Importance of Multivariate Analysis of Analytical Chemistry Data," Current Computer-Aided Drug Design, vol.6, 2010
Taketo Okada, Farit Mochamad Afendi, MD. ALTAF-UL-AMIN, Hiroki Takahashi, Kensuke Nakamura, Shigehiko Kanaya
"Investigation of the pharmacological effect of tokishakuyakusan by global transcriptional analysis in humans," Journal of Traditional Medicines, vol.27, no.2, pp66-77, 2010
Tomoyuki Hayasaki, Akira Katoh, Masayuki Shojo, Masatomo Sakurai, Tetsuro Oikawa, Yuka Ninomiya, Tatsuhiko Ikeda, Shigehiko Kanaya, Toshihiko Hanawa
"Differences in human gene expression induced by tokishakuyakusan containing different grades of Angelica radix," Journal of Traditional Medicines, vol.27, no.2, pp166-178, 2010
Tomoyuki Hayasaki, Akira Katoh, Masayuki Shojo, Masatomo Sakurai, Tetsuro Oikawa, Yuka Ninomiya, Tatsuhiko Ikeda, Shigehiko Kanaya, Toshihiko Hanawa
"代謝反応経路をいかに予測するか？," 日本化学会情報化学部会誌, vol.27, pp41-43, 2009.8
田中 健一, 高橋　弘喜, 平井 晶, MD. ALTAF-UL-AMIN, 金谷　重彦
"An approach to peak detection in GC-MS chromatograms and application of KNApSAcK database in prediction of candidate metabolites," Plant Biotechnology, vol.26, pp167-174, 2009
Takashi Oishi, Ken-ichi Tanaka, Takuya Hashimoto, Yoko Shinbo, Kanokwan Jumtee, Takeshi Bamba, Eiichiro Fukusaki, Hideyuki Suzuki, Daisuke Shibata, Hiroki Takahashi, Hiroko Asahi, Ken Kurokawa, Yukiko Nakamura, Aki Hirai, Kensuke Nakamura, Altaf-Ul-Amin, Shigehiko Kanaya
"KNApSAcK gene classification system for Arabidopsis thaliana: Comparative genomic analysis of unicellular to seed plants," Plant Biotechnology, vol.26, pp509-516, 2009
Hiroki Takahashi, Mai Kawazoe, Masayoshi Wada, Aki Hirai, Kensuke Nakamura, MD. ALTAF-UL-AMIN, Yuji Sawada, Masami Yokota Hirai, Shigehiko Kanaya
"Metabolic pathway prediction based on inclusive relation between cyclic substructures.," Plant Biotechnology, vol.26, pp459-468, 2009
Kenichi Tanaka, Kensuke Nakamura, Tamio Saito, Hiroyuki Osada, Aki Hirai, Hiroki Takahashi, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
"Predicting conformation of protein complexes by determining statistically significant domain-domain interactions.," Plant Biotechnology, vol.26, pp495-501, 2009
Kensaku Nishikata, Masayoshi Wada, Hiroki Takahashi, Kensuke Nakamura, Shigehiko Kanaya, MD. ALTAF-UL-AMIN
"Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal," Molecular Microbiology, vol.70, no.3, pp608, Nov. 2008
Kaori Uchida, Asako Furukohri, Yutaka Shinozaki, Tetsuya Mori, Daichi Ogawara, Shigehiko Kanaya, Takehiko Nohmi, Hisaji Maki, Masahiro Akiyama
[ doi:10.1111/j.1365-2958.2008.06423.x ]
"Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal," Molecular Microbiology, vol.70, no.3, pp608, Nov. 2008
Kaori Uchida, Asako Furukohri, Yutaka Shinozaki, Tetsuya Mori, Daichi Ogawara, Shigehiko Kanaya, Takehiko Nohmi, Hisaji Maki, Masahiro Akiyama
[ doi:10.1111/j.1365-2958.2008.06423.x ]
"SVD-based Anatomy of Gene Expressions for Correlation Analysis in Arabidopsis thaliana," DNA Res., vol.15, pp367-374, 2008.10
Atsushi Fukushima, Masayoshi Wada, Shigehiko Kanaya, Masanori Arita
"tRNADB-CE: tRNA gene database curated manually by expert," Nucleic Acids Res., vol.37, ppD163-D168, 2008.10
Takashi Abe, Toshimichi Ikemura, Yasuo Ohara, HiroshiUehara, Makoto Kinouchi, Shigehiko Kanaya, Yuko Yamada, Akira Muto, Hachiro Inokuchi
"Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry," Anal Bioanal Chem, vol.391, no.8, pp2769, Aug. 2008
Takahashi, H, Kai, K, Shinbo, Y, Tanaka, K, Ohta, D, Oshima, T, Altaf-Ul-Amin, M, Kurokawa, K, Ogasawara, N, Kanaya, S.
[ doi:10.1007/s00216-008-2195-5 ]
"ESTIMATION METHODOLOGY OF SUBSTRATE-PRODUCT PAIRS BASED ON REACTION RULES OF ENZYMES USING KNAPSACK DB," Jul. 2008
Shigehiko Kanaya, Ken-ichi Tanaka, Hiroki Takahashi, Yoko Shinbo, MD. ALTAF-UL-AMIN, Hiroko Asahi, Atsushi Fukushima, Aki Hirai, Kazuki Saito, Daisaku Ohta, Daisuke Shibata
"Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry," Analytical Bioanalytical Chemistry, Jun. 2008
Hiroki Takahashi, Kosuke Kai, Shimbo Yoko, Kenich Tanaka, Daisaku Ohta, Taku Oshima, MD・ALTAF-UL-AMIN, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
"Metabolite annotations based on the integration of mass spectral information," Plant J, vol.54, no.5, pp949-962, Jun. 2008
Yoko Iijima, Yukiko Nakamura, Yoshiyuki Ogata, Ken'ichi Tanaka, Nozomu Sakurai, Kunihiro Suda, Tatsuya Suzuki, Hideyuki Suzuki, Koei Okazaki, Masahiko Kitayama, Shigehiko Kanaya, Koh Aoki, Daisuke Shibata
"Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis.," DNA Res., vol.15, no.2, pp73-81, Apr. 2008
Morimoto, T., Kadoya, R., Tohata, M., Sawada, K., Liu, S., Ozawa, T., Kodama, T., Kakeshita, H., Kageyama, Y., Manabe, K., Kanaya, S., Ara, K., Ozaki, K., Ogasawara, N.
"Enhanced Recombinant Protein Productivity by Genome Reduction in Bacillus subtilis," DNA Res, vol.15, no.2, pp73, Apr. 2008
Morimoto, T, Kadoya, R, Endo, K, Tohata, M, Sawada, K, Liu, S, Ozawa, T, Kodama, T, Kakeshita, H, Kageyama, Y, Manabe, K, Kanaya, S, Ara, K, Ozaki, K, Ogasawara, N.
[ doi:10.1093/dnares/dsn002 ]
"Metabolic profiling of flavonoid in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry," Phytochemistry, vol.69, no.1, pp99-111, Jan. 2008
Suzuki, H., Sakurai, R., Ogata, Y., Nakamura, Y., Sakurai, N., Kitajima, M., Takayama, H., Kanaya, S., Aoki, K., Shibata, D.,, Saito, K.,
"Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal," Molecular Microbiology, vol.70, no.3, pp608-622, 2008
Kaori Uchida, Asako Furukohri, Yutaka Shinozaki, Tetsuya Mori, Daichi Ogawara, Shigehiko Kanaya, Takehiko Nohmi, Hisaji Maki, Masahiro Akiyama
"Differences and similarityies in the developmental status of embryo-derived stem cells and primordial germ cells revealed by global expression profiling," Gene to Cells, vol.13, pp863-877, 2008
Nathan Mise, Takuya Fuchikami, Michihiko Sugimoto, Satoru Kobayakawa, Fumio Ike, Takehiko Ogawa, Takeshi Tada, Shigehiko Kanaya, Tosiaki Noce, Kuniya Abe
"Differential metabolomics unraveling lingt/dark regulation of metabolic activities in Arabidopsis cell culture," Planta, vol.227, no.1, pp57-66, 1 Dec. 2007
Nakamura Y., Kimura, A., Saga, H., Oikawa, A., Shinbo, Y., Sakurai, N., Suzuki, H., Kitayama, M., Shibata, D., Kanaya, S., Ohta, D.
"Metabolic profiling using Fourier-transform ion-cyclotron-resonance mass spectrometry," Anal. Bioanal. Chem., vol.389, pp1469-1475, 1 Dec. 2007
Daisaku Ohta, Daisuke Shibata, Shigehiko Kanaya
"Prediction of Japanese green tea ranking by Fourier transform near-infrared reflectance spectroscopy," J. Agric. Food Chem., vol.55, pp9908-9912, 2007.10
Tatsuhiko Ikeda, 金谷　重彦, Tsutomu Yonetani, Akio Kobayashi, Eiichiro Fukusaki
"Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model," BMC Bioinformatics, vol.8, pp343.1-343.10, Sep. 2007
Morioka, R., Kanaya, S., Hirai, M.Y., Yano, M., Ogasawara, N., Satio, K.,
" Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model," BMC Bioinformatics, vol.8, no.1, pp313, Sep. 2007
Morioka, R., Kanaya, S., Hirai, M.Y., Yano, M., Ogasawara, N., Saito, K.
"The entire organization of transcription units on the Bacillus subilis genome," BMC Genomics, vol.8, pp197.1, 28 Jun. 2007
Hirokazu Kobayashi, Joe Akitomi, Nobuyuki Fujii, Md.Altaf-Ul-Amin, Kazuo Kobayashi, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
"ヒト・チンパンジーを含む近縁な脊椎動物を対象としたゲノム間比較の新規な情報学的研究," 遺伝　, vol.別冊, no.21, pp187-193, 2007.3.20
池村淑道, 阿部貴志, 菅原秀明, 金谷重彦, 前野聖
"Sequences from almost all prokaryotic, eukaryotic, and viral genomes available could be classified according to genomes on a large-scale self-organizing map constructed with the earth simulator," J. Earth Simulator, vol.6, pp17-23, 2006.9
Takashi Abe, Hideak Sugawara, Shigehiko Kanaya, Toshimichi Ikemura
"Development and implementation of an algorithm for detection of protein complexes in large interaction networks," BMC Bioinformatics, vol.7, no.2006, pp207.1-207.13, 14 Apr. 2006
MD・ALTAF-UL-AMIN, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya
"Comparative analysis of argK-tox clusters and their flanking region in Phaseolotoxin-producing Pseudomonas syringae pathovars," J.Mol.Evol., vol.63, pp401-414, 2006
Hiroyuki Genka, Tomoya Baba, Masataka Tsuda, Shigehiko Kanaya, Hirotada Mori, Takanobu Yoshida, Masako Tsujimoto Noguchi, Kenichi Tsuchiya, Hiroyuki Sawada
"Elucidating conservation of genes in multiple genomes based on graphs configured by bidirectional best-hit relationships," IPSJ Transactions on Bioinformatics, vol.1, no.No.SIG17 (TBIO1), pp1-11, 2006
Hijiri Maeno, MD・ALTAF-UL-AMIN, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
"Comparison of protein complexes predicted from PPI networks by DPClus and Newman clustering algorithms," IPSJ Transactions on Bioinformatics, vol.47, no.SIG17 (TBIO 1), pp31-41, 2006
Hisashi Tuji, MD・ALTAF-UL-AMIN, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya
"FT-ICR MSを用いたメタボローム解析," 生物工学, no.6, pp219-222, 2006
及川　彰, 中村由紀子, 金谷　重彦, 太田大策
"Clarification of pathway-specific inhibition by fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotype studies," Plant Physiol., vol.142, pp398-413, 2006
Akira Oikawa, Yukiko Nakamura, Tomonori Ogura, Atsuko Kimura, Hideuki Suzuki, Nozomu Sakurai, Yoko Shinbo, Daisuke Shibata, Shigehiko Kanaya, Daisaku Ohta
"DPClus: A density-periphery based graph clustering software mainly focused on detection of protein complexes in interaction networks," J. Comput. Aided Chem., vol.7, pp150-156, 2006
Md.Altaf-Ul-Amin, Hisashi Tuji, Ken Kurokawa, Hiroko Asahi, Yoko Shinbo, Shigehiko Kanaya
"Integrated data mining of transcriptome and metabolome based on BL-SOM," J. Comput. Aided Chem., vol.7, pp125-136, 2006
Mitsuru Yano, Shigehiko Kanaya, Md.Altaf-Ul-Amin, Ken Kurokawa, Masami Yokota Hirai, Kazuki Saito
"Bioinformatics tool for genomic era: A step towards the In silico experiments - focused on molecular cloning," J. Comput. Aided Chem., vol.7, pp102-115, 2006
Akira Ohyama, Ken Kurokawa, Kyotetsu Enai, Hitohiro Saitoh, Shigehiko Kanaya, Md-Altaf-Ul-Amin, Naotake Ogasawara
"Species-metabolite database (KNApSAcK): Elucidating diversity of flavonoids," J. Comput. Aided Chem., vol.7, pp94-101, 2006
Yoko Shinbo, Shun-ichi Sagkagakuchi, Yukiko Nakamura, MD・ALTAF-UL-AMIN, Ken Kurokawa, Kimito Funatsu, Shigehiko Kanaya
"Comparative Analysis of argK-tox Clusters and Their Flanking Regions in Phaseolotoxin-Producing Pseudomonas syringae Pathovars," J. Mol. Evol., vol.63, pp401-414, 2006
Genka H, Baba T, Kanaya S, Mori H, Yoshida T, Noguchi MT, Tsuchiya K, Sawada S
"Self-organizing map (SOM) unveils and visualizes hidden sequence characteristics of a wide range of eukaryote genomes," Gene, vol.365, pp27-34, 2006
Takashi Abe, Hideak Sugawara, Shigehiko Kanaya, Makoto Kinouchi, Toshimichi Ikemura
"A flexible representation of omic knowledge for thorough analysis of microarray data," Plant Methods, vol.2, no.5, pp1-18, 2006
Yoshikazu Hasegawa, (10 persons), Shigehiko Kanaya, (3 persons), Teturo Toyoda
"Spherical SOM and arrangement of neurons using helix on sphere," IPSJ Trans. Math. Modelling and Its Applications, vol.47, pp56-60, 2006
Hirokazu Nishio, MD・ALTAF-UL-AMIN, Ken Kurokawa, Shigehiko Kanaya
"Global landscape of protein complexes in the yeast Saccharomyces cerevisiae," Nature, vol.440, pp637-643, 2006
Nevan J. Krogan, (40 persons), MD・ALTAF-UL-AMIN, Shigehiko Kanaya, (8 persons), Andrew Emili, Jack F. Greenblatt
"Large-scale identification of protein-protein interaction of Escherichia coli K12," Genome Research, vol.16, no.6, pp686-691, 2006
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, (8 persons), MD・ALTAF-UL-AMIN, (7 persons), Shigehiko Kanaya, Chieko Wada, Hirotada Mori
"KNApSAcK: A Comprehensive species-metabolite relationship," Biotechnol.Agric.Forestry, vol.57, pp165-181, 2006
Yoko Shinbo, Yukiko Nakamura, MD・ALTAF-UL-AMIN, Hiroko Asahi, Ken Kurokawa, Masahiro Arita, Daisaku Ohta, Daisuke Shibata, Kazuki Saito, Shigehiko Kanaya
"ケモインフォマティクス、バイオインフォマティクス、二度おいしいデータマイニング:From Chemometrics to Bioinformatics," CICSJ Bulletin, vol.24, no.3, pp57-89, 2006
金谷重彦
"Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples," DNA Res., vol.12, pp281-290, 2005
Takashi Abe, Hideaki Sugawara, Makoto Kinouchi, Shigehiko Kanaya, Toshimichi Ikemura
"Accurate extraction of functional associations between proteins based on common interaction partners and common domains," Bioinformatics, vol.21, pp2043-8, 2005
K. Okada, S.Kanaya, K. Asai
"Sequential binding of SeqA protein to nascent DNA segments at replication forks in synchronized cultures of Escherichia coli," Mol. Microbiol., vol.55, pp289-298, 2005
M. Yamazoe, S. Adachi, S. Kanaya, K Ohsumi, S. Hiraga
"Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics.," J Biol Chem, vol.280, pp25590-25595, 2005
M. Hirai, M. Klein, Y. Fujikawa, M. Yano, D. Goodenowe, Y. Yamazaki, S. Kanaya, Y. Nakamura, M. Kitayama, H. Suzuki, N. Sakurai, D. Shibata, J. Tokuhisa, M. Reichelt, J. Gershenzon, J. Papenbrock, K. Saito
"GeneLook: a novel ab initio gene identification system suitable for automated annotation of prokaryotic sequences," Gene., vol.346, pp115-25, 2005
T. Nishi, T. Ikemura, S. Kanaya
"線形動的システムと自己組織化マップを用いた細胞の状態変化の検出," 生体医工学, vol.42巻, no.4号, pp83-89, 2004
森岡涼子, 金谷　重彦, 佐藤哲大, 小林　和夫, 小笠原直毅, 湊小太郎
"Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana," Proc.Natl.Acad.Sci.USA, vol.Early Edition, no.101, pp10205-10210, 2004
M. Hirai, M. Yano, D. Goodenowe, S. Kanaya, T. Kimura, M.Awazuhara, M. Arita, T. Fujiwara, K. Saito
"自己組織化マップ（SOM）：比較ゲノムと生物多様性研究への新規な情報学的手法、ゲノミクス・プロテミクスの新展開," NTN, pp890-896, 2004
阿部貴志, 金谷重彦, 木ノ内誠, 池村淑道
"大腸菌マイクロアレイ解析、ゲノミクス・プロテミクスの新展開," NTN, pp31-46, 2004
大島拓, 金谷重彦
"発現プロファイルに基づいた遺伝子の高精度分類法、バイオチップの最新技術と応用," CMC出版, pp109-118, 2004
中村由紀子, 池村淑道, 小笠原直毅, 金谷重彦
"Prediction of Protein Functions Based on K-cores of Protein-Protein Interaction Networks and Amino Acid Sequences," 1. Genome Informatics Series No. 14, ISSN:0919-9454, pp498-499, Dec. 2003
Md. Altaf-Ul-Amin, Kensaku Nishikata, Toshihiro Koma, Teppei Miyasato, Yoko Shinbo, Md. Arifuzzaman, Chieko Wada, Maki Maeda, Taku Oshima, Hirotada Mori, Shigehiko Kanaya
"Informatics for unvailing hidden genome signatures," Genome Res., pp693-702, Apr. 2003
T. Abe, S. Kanaya, M. Kinouchi, Y. Ichiba, T. Kozuki, T. Ikemura
"Comparative genome analysis focused on periodicity from prokaryote to higher eukaryote genomes based on power spectrum.," J. Comput. Chem. Jpn, vol.2, pp87-94, 2003
A. Fukushima, T. Ikemura, S. Kanaya
"ゲノム配列にひそむ特徴的なサインからみた生物多様性、ゲノムからみた生物の多様性と進化," （五條堀　孝編、シュプリンガー・フェアラーク東京）, pp58-64, 2003
金谷重彦, 阿部貴志, 木ノ内誠, 池村淑道
"ゲノム配列に潜む組織化された内部構造," 数理科学６月号, 2002.6
金谷重彦, 福島敦史, 森浩禎, 渡辺良久, 市場勇太, 池村淑道
"Changes in body temperature pattern in vertebrates do not influence the codon usages of alpha-globin genes," Genes Genet. Syst, vol.77, pp197-207, 2002
K. Hamada, T. Horiike, S. Kanaya, H. Nakamura, H. Ota, T. Yatogo, K. Okada, H. Nakamura, T. Shinozawa
"Conservation of translation initiation sites based on dinucleotide frequency and codon usage in Escherichia coli K-12 (W3110).," DNA Res., vol.9, pp19-24, 2002
K. Yamagishi, T. Oshima, Y. Masuda, T. Ara, S. Kanaya, H. Mori
"T. Ara, H. Mori, Distribution of repetitive sequences on the leading and lagging strands of the Escherichia coli genome," DNA Res., vol.9, pp1-10, 2002
M. Kawano, S. Kanaya, T. Oshima, Y. Masuda
"A phylogenomic study of the OCTase genes in Pseudomonas syringae pathovars.," J. Mol. Evol., vol.54, pp437-457, 2002
H. Sawada, S. Kanaya, M. Tsuda, F. Suzuki, K. Azegami, N. Saitou
"Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12," Mol. Micorbiol., vol.46, pp281-291, 2002
T. Oshima, H. Aiba, Y. Masuda, S. Kanaya, M. Sugiura, B. Wanner, H. Mori, T. Mizuno
"Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis.," Gene, vol.300, pp203-211, 2002
A. Fukushima, T. Ikemura, M. Kinouchi, T. Oshima, Y. Kudo, H. Mori, S. Kanaya
"Detection of periodicity in eukaryotic genomes on the basis of power spectrum analysis.," Genome Inf., vol.Series No. 13,, pp21-29, 2002
A. Fukushima, T. Ikemura, T. Oshima, H. Mori, S. Kanaya
"A novel bioinformatics strategy for unveiling hidden genome signatures of eukaryotes.," Genome Inf., vol.Series No. 13,, pp12-20, 2002
T. Abe, S. Kanaya, M. Kinouchi, Y. Ichiba, T. Kozuki, T. Ikemura
受賞
"Best Poster Award (Silver)," 15th International Conference on Biioinformatics, Sep. 2016
Azian Azamimi Abdullah, MD. ALTAF-UL-AMIN, Ammar Zakaria, Shigehiko Kanaya
"PCP論文賞," 日本植物生理学会, Mar. 2014
Farit Mochamad Afendi, Taketo Okada, Mami Yamazaki, Aki Hirai-Morita, Yukiko Nakamura, Kensuke Nakamura, Shun Ikeda, Hiroki Takahashi, MD. ALTAF-UL-AMIN, Latifah K. Darusman, Kazuki Saito, Shigehiko Kanaya
"日本植物細胞分子生物学会報 2012年 6月号　2012年度学会賞　論文賞受賞," Jun. 2012
Kosuke Kai, Hiroki Takahashi, Hirohisa Saga, Takumi Ogawa, Shigehiko Kanaya, Daisaku Ohta
所属学協会
資料