学術論文 |
- "Structural insight into the nuclear transportation mechanism of PPARg by Transportin-1," Cold Spring Harbor Laboratory, 17 Sep. 2024
- Sachiko Toma, Yutaro Nakamura, Akihiro Kawamoto, Hikaru Shimizu, Koki Hayama, Ruri Kojima, Kanami Yoshimura, Masaki Ishii, Mika Hirose, Toshiaki Teratani, Shinya Ohata, Takayuki Kato, Hironari Kamikubo, Toshimasa Itoh, Kengo Tomita, Toshiyuki Shimizu
 [ doi:10.1101/2024.09.17.612794 ]
- "Lipid cubic phase with an organic-inorganic hybrid structure formed by organoalkoxysilane lipid," Chem. Commun. , vol.60, pp2168-2171, 11 Jan. 2024
- M. Kariya, K. Omoto, K. Nomura, K. Yonezawa, H. Kamikubo, T. Nishino, T. Inoie, G. Rapenne, K. Yasuhara
[ doi:10.1039/D3CC05167F ]
- "Conformation state-specific monobodies regulate the functions of flexible proteins through conformation trapping," Protein Sci., vol.32, ppe4813(1)-e4813(16), 20 Oct. 2023
- Nakamura Ibuki, Hiroshi Amesaka, Mizuo Hara, Kento Yonezawa, Keisuke Okamoto, Hironari Kamikubo, Shun-ichi Tanaka, Takashi Matsuo
[ doi:10.1002/pro.4813 ]
- "Elucidating polymorphs of crystal structures by intensity-based hierarchical clustering analysis of multiple diffraction data sets," Acta Crystallogr D Struct Biol, 1 Oct. 2023
- Hiroaki Matsuura, Naoki Sakai, Sachiko Toma, Norifumi Muraki, Koki Hayama, Hironari Kamikubo, Shigetoshi Aono, Yoshiaki Kawano, Masaki Yamamoto, Kumio Hirata
[ doi:10.1107/S20597983230070 ]
- "Machine learning-based impedance system for real-time recognition of antibiotic-susceptible bacteria with parallel cytometry.," Sensors and Actaurtors B: Chemical, vol.374, 1 Jan. 2023
- Tang, T, Liu, X, Yuan, Y, Kiya, R, Zhang, T, Yang, Y, Suetsugu, S, Yamazaki, Y, Ota, N, Yamamoto, K, Kamikubo, H, Tanaka, Y, Li, M, Hosokawa, Y., Yalikun, Y.
[ doi:10.1016/j.snb.2022.132698 ]
- "Machine learning-based impedance system for real-time recognition of antibiotic-susceptible bacteria with parallel cytometry ," Sensors and Actuators B: Chemical, pp132698, 30 Oct. 2022
- Tao Tang, Xun Liu, Yapeng Yuan, Ryota Kiya, Tianlong Zhang, Yang Yang, Shiro Suetsugu, Yoichi Yamazaki, Nobutoshi Ota, Koki Yamamoto, Hironari Kamikubo, Yo Tanaka, Ming Li, Yoichiroh Hosokawa
[ doi:10.1016/j.snb.2022.132698 ]
- "Parallel Impedance Cytometry for Real-Time Screening of Bacterial Single Cells from Nano- to Microscale ," ACS sensor, 25 Oct. 2022
- Tao Tang, Xun Liu, Yapeng Yuan, Tianlong Zhang, Ryota Kiya, Yang Yang, Yoichi Yamazaki, Hironari Kamikubo, Yo Tanaka, Ming Li, Yoichiroh Hosokawa, Yaxiaer Yalikun
[ doi:10.1021/acssensors.2c013 ]
- "Shape-based separation of drug-treated Escherichia coli using viscoelastic microfluidics," Lab on a Chip, vol.22, pp 2801-2809, 6 May. 2022
- Tianlong Zhang, Hangrui Liu, Kazunori Okano, Tao Tang, Kazuki Inoue, Yoichi Yamazaki, Hironari Kamikubo, Amy K Cain, Yo Tanaka, David W Inglis, Yoichiroh Hosokawa, Yaxiaer Yalikun, Ming Li
[ doi:10.1039/D2LC00339B ]
- "Beyond multi-disciplinary and cross-scale analyses of the cyanobacterial circadian clock system," Biophysics and Physicobiology, vol.Volume 18, pp267-268, Nov. 2021
- Shuji Akiyama, Hironari Kamikubo
[ doi:10.2142/biophysico ]
- "A unique photochromic UV-A sensor protein, Rc-PYP, interacting with the PYP-binding protein," Physical Chemistry Chemical Physics, vol.23, pp17813-17825, 7 Sep. 2021
- Suhyang Kim, Yusuke Nakasone, Akira Takakado, Yoichi Yamazaki, Hironari Kamikubo, Masahide Terazima
[ doi:10.1039/d1cp02731j ]
- "Skeletal Structure of the Chromophore of Photoactive Yellow Protein in the Excited State Investigated by Ultraviolet Femtosecond Stimulated Raman Spectroscopy," The Journal of Physical Chemistry B, vol.125(23), pp6154-6161, 17 Jun. 2021
- Hikaru Kuramochi, Satoshi Takeuchi, 上久保 裕生, Mikio Kataoka, Tahei Tahara
[ doi:10.1021/acs.jpcb.1c02828 ]
- "Structure elements can be predicted using the contact Volume among protein residues," Biophysics and Physicobiology, vol.v18.006, pp50-59, 18 Feb. 2021
- Yasumichi Takase, Yoichi Yamazaki, Yugo Hayashi, Sachiko Toma, Hironari Kamikubo
[ doi:10.2142/biophysico ]
- "Wavelength-Dependent Photoreaction of PYP from Rhodobacter capsulatus," Biochemistry 2020, 17 Dec. 2020
- Suhyang Kim, Yusuke Nakasone, Akira Takakado, Yoichi Yamazaki, Hironari Kamikubo, Masahide Terezima
[ doi:10.1021/acs.biochem.Oc00821 ]
- "Spectroscopic and structural characteristics of a dual-light sensor protein, PYP-phytochrome related protein," Biophysics and Physicobiology, vol.17, pp103-112, 2020.9.1
- Jia-Siang Sum, 山崎 洋一, Keito Yoshida, Kento Yonezawa, 林 有吾, Mikio Kataoka, 上久保 裕生
[ doi:10.2142/biophysico.BSJ-2020015 ]
- "Mechanism of the light-driven proton pump of bacteriorhodopsin based on the consistency principle," Biophysics and Physicobiology, vol.16, pp274-279, 29 Nov. 2019
- Mikio Kataoka, Hironari Kamikubo
[ doi:10.2142/biophysico.16.0_274 ]
- "Fifth-order time-domain Raman spectroscopy of photoactive yellow protein for visualizing vibrational coupling in its excited state," Science Advances, vol.Vol. 5, no. 6, pp4490, 7 Jun. 2019
- Hikaru Kuramochi, Satoshi Takeuchi, Hironari Kamikubo, Mikio Kataoka, Tahei Tahara
[ doi:DOI: 10.1126/sciadv.aau4490 ]
- "Construction of a Quadrangular Tetramer and a Cage-Like Hexamer from Three-Helix Bundle-Linked Fusion Proteins," ACS Synth. Biol, vol.8(5), pp1112-1120, 9 Apr. 2019
- Takaaki Miyamoto, Yugo Hayashi, Keito Yoshida, Hiroki Watanabe, Takayuki Uchihashi, Kento Yonezawa, Nobutaka Shimizu, Hironari Kamikubo
 [ NAISTレポジトリ ]
- "Structural Basis for the Function of the β-Barrel Assembly-Enhancing Protease BepA," Journal of Molecular Biology, vol.431, no.3, pp625-635, 1 Feb. 2019
- Mohammad Shahrizal, Yasushi Daimon, Yoshiki Tanaka, Yugo Hayashi, Shintaro Nakayama, Shigehiro Iwaki, Shin-ichiro Narita, Hironari Kamikubo, Yoshinori Akiyama, Tomoya Tsukazaki
[ NAISTレポジトリ ]
- "連続滴定X線溶液散乱測定を志向したμ流路型自動サンプリングシステムの開発," Journal of Computer Chemistry, Japan, vol.17 巻 (2018), pp57-64, 2018.3.26
- 上久保 裕生
- "Statistical description of the denatured structure of a single protein, staphylococcal nuclease, by FRET analysis ," Biophysical Reviews, vol.2017, 25 Nov. 2017
- Mariko Yamaguchi, Emi Ohta, Takuya Muto, Takayoshi Watanabe, Takahiro Hohsaka, Yoichi Yamazaki, Hironari Kamikubo, Mikio Kataoka
- "Solution scattering approaches to dynamical ordering in biomolecular systems," Biochimica et Biophysica Acta-General Subjects, vol.10.1016/j.bbagen.2017.10.015 , 26 Oct. 2017
- Pau Bernadó, Nobutaka Shimizu, Giuseppe Zaccai, Hironari Kamikubo, Masaaki Sugiyama
- "Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT," Scientific Reports , vol.7, pp12142, 22 Sep. 2017
- Tadashi Satoh, Chihong Song, Tong Zhu, Takayasu Toshimori, Kazuyoshi Murata, Yugo Hayashi, Hironari Kamikubo, Takayuki Uchihashi, Koichi Kato
- "Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal," Scientific Reports, vol.7, pp9361, 24 Aug. 2017
- K. Yonezawa, N. Shimizu, K. Kurihara, Y. Yamazaki, H. Kamikubo, M. Kataoka
- "Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI," FEBS J, vol.284(18), pp3114-3127, 24 Jul. 2017
- M. Nawata, H. Tsutsumi, Y Kobayashi, S. Unzai, S. Mine, T. Nakamura, K. Uegaki, H. Kamikubo, M. Kataoka, D. Hamada
- "Aggregation control by multi-stimuli-responsive poly(N-vinylamide) derivatives in aqueous system," Nanoscale Research Letters, vol.12, pp461-461, 21 Jul. 2017
- Ryo Kawatani, Yasuhiro Nishiyama, Hironari Kamikubo, Kiyomi Kakiuchi, Hiroharu Ajiro
- "Active-Site pKa Determination for Photoactive Yellow Protein Rationalizes Slow Ground-State Recovery," BIOPHYSICAL JOURNAL, vol.112(10), pp2109-2116, 23 May. 2017
- Oktaviani Nur Alia, Pool Trijntje J, Yoshimura Yuichi, Hironari Kamikubo, Scheek Ruud M, Kataoka Mikio, Mulder Frans A. A.
- "Probing the early stages of photoreception in photoactive yellow protein with ultrafast time-domain Raman spectroscopy ," Nature Chemistry, 6 Feb. 2017
- H. Kuramochi, S. Takeuchi, K. Yonezawa, Hironari Kamikubo, Mikio Kataoka, T.Tahara
- "Polyglycine acts as a rejection signal for protein transport at the chloroplast envelope ," PLoS ONE, vol.11, pp0167802 , 9 Dec. 2016
- J. K. Endow, A. G. Rocha, A. J. Baldwin, R. L. Roston, T. Yamaguchi, H. Kamikubo, K. Inoue
- "Unambiguous Determination of the Ionization State of a Photoactive Protein Active Site Arginine in Solution by NMR Spectroscopy ," Angewandte Chemie, 29 Nov. 2016
- Y.Yoshimura, N. A.Oktaviani, K.Yonezawa, Hironari Kamikubo, F. A. A. Mulder
- "VIPP1 has a disordered C-terminal tail necessary for protecting photosynthetic membranes against stress in Arabidopsis," Plant Physiology, vol.171(1), pp532, 12 May. 2016
- Lingang Zhang, Hideki Kondo, Hironari Kamikubo, MIkio Kataoka, Wataru Sakamoto
- "Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein," Computational and Structural Biotechnology Journal, vol.14(2016), pp16-19, 31 Oct. 2015
- Yusuke Kanematsu, Hironari Kamikubo, Mikio Kataoka, Masanori Tachikawa
- "Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551: structural insights into domain swapping of cytochrome c family proteins.," PLoS One, vol.10(4), ppe0123653, 8 Apr. 2015
- Nagao S, Ueda M, Osuka H, Komori H, Kamikubo H, Kataoka M, Higuchi Y, Hirota S.
[ NAISTレポジトリ ]
- "Decreased amyloidogenicity by mutational modulation of surface properties of the immunoglobulin light chain BRE variable domain," Biochemistry, vol.53, pp5162-5173, 12 Aug. 2014
- Yuta Kobayashi, Hirotaka Tsutsumi, Tetsuyuki Abe, Kyohei Ikeda, Yuki Tashiro, Satoru Unzai, Hironari Kamikubo, Mikio Kataoka, Hidekazu Hiroaki, Daizo Hamada
- "Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer," Biochemistry, vol.53, pp4696-4703, 30 Jun. 2014
- Deshpande, M. S., Parui, P. P., Kamikubo, H., Yamanaka, M., Nagao, S., Komori, H., Kataoka, M., Higuchi, Y., Hirota, S.
- "Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin," Advanced Materials Reserch, vol.896, pp85-88, 7 Feb. 2014
- Dian Novitasari, Hironari Kamikubo, Youichi Yamazaki, Mariko Yamaguchi, Mikio Kataoka
- "Formation of oligomeric cytochrome c during folding by intermolecular hydrophobic interaction between N- and C-terminal α-helices," Biochemistry, 3 Dec. 2013
- Parui PP1, Deshpande MS, Nagao S, Kamikubo H, Komori H, Higuchi Y, Kataoka M, Hirota S.
- "Structural Basis of α-Catenin Recognition by EspB from Enterohaemorrhagic E. coli Based on Hybrid Strategy Using Low-Resolution Structural and Protein Dissection," PLoS One, vol.8, pp71618-71618, 14 Aug. 2013
- Mitsuhide Hamaguchi, Hironari Kamikubo, Kayo N. Suzuki, Yoshihisa Hagihara, Itaru Yanagihara, Ikuhiro Sakata, Mikio Kataoka, Daizo Hamada
- "Molecular dissection of IZUMO1, a sperm protein essential for sperm-egg fusion," Development, vol.140, pp3221-3229, Aug. 2013
- Naokazu Inoue, Daizo Hamada, Hironari Kamikubo, Kunio Hirata, Mikio Kataoka, Masaki Yamamoto, Masahito Ikawa, Masaru Okabe, Yoshihisa Hagihara
- "Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory," Chem. Phys., vol.419, pp50-53, 20 Jun. 2013
- Yukiumi Kita, Hironari Kamikubo, Mikio Kataoka, Masanori Tachikawa
- "Preferential domain orientation of HMGB2 determined by weak intramolecular interactions mediated by the interdomain linker," Chem. Phys., vol.419, pp212-223, 20 Jun. 2013
- Jun-ichi Uewak, Hironari Kamikubo, Jun-ichi Kurita, Noriteru Hiroguchi, Hiroshi Moriuchi, Michiteru Yoshida, Mikio Kataoka, Naoko Utsunomiya-Tate, Shin-ichi Tate
- "働いているタンパク質の構造を実時間で見た！－次世代構造生物科学への期待," 化学, vol.68, pp74-75, 2013.4.1
- 上久保 裕生, 片岡 幹雄
- "1H, 13C, and 15N resonance assignment of photoactive yellow protein," Biomol.NMR Assign., vol.7, pp97-100, Apr. 2013
- Trijntje J. Pool, Nur Alia Oktaviani, Hironari Kamikubo, Mikio Kataoka, Frans A. A. Mulder
- "結晶構造解析と溶液散乱測定から見た光センサー蛋白質の局所構造と全体構造," 日本結晶学会誌, vol.55, pp52-57, 2013.2.28
- 上久保 裕生
- "Time-resolved observation of chiral-index-selective wrapping on single-walled carbon nanotube with non-aromatic polysilane," J. Am. Chem. Soc., vol.135, pp2374-2383, 13 Feb. 2013
- Woojung Chung, Kazuyuki Nobusawa, Hironari Kamikubo, Mikio Kataoka, Michiya Fujiki, Masanobu Naito
- "Fingerprint Signatures of Lanthanide Circularly Polarized Luminescence from Proteins Covalently Labeled by a β-Diketonate Europium(III) Chelate," Chem. Commun. , vol.49, pp4604-4606, 2013
- Junpei Yuasa, Ohno, T., Tsumatori, H., Shiba, R., Hironari Kamikubo, Mikio Kataoka, Tsuyoshi Kawai
- "Maintenance of the Secondary Structure of Horse Cytochrome c during the Conversion Process of Monomers to Oligomers by Addition of Ethanol," J. Biochem. , vol.152, pp521-529, Dec. 2012
- Shun Hirota, Ueda, M., Hayashi, Y., Satoshi Nagao, Hironari Kamikubo, Mikio Kataoka
- "Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography," Proc. Natl. Acad. Sci. USA, vol.109, pp19256-19261, 6 Nov. 2012
- Friedrich Schotte, Hyun Sun Cho, Ville R. I. Kaila, Hironari Kamikubo, Naranbaatar Dashdorj, Eric R. Henry, Timothy J. Graber, Robert Henning, Michael Wulff, Gerhard Hummer, Mikio Kataoka, Philip A. Anfinrud
[ NAISTレポジトリ ]
- "Structural basis for Arf6–MKLP1 complex formation on the Flemming body responsible for cytokinesis," EMBO J., vol.31, pp2590-2603, 2012.5
- Hisayoshi Makyio, Minako Ohgi, Tomomi Takei, Senye Takahashi, Hiroyuki Takatsu, Yohei Katoh, Ayako Hanai, Tomoko Ueda, Yasunori Kanaho, Yong Xie, Hye-Won Shin, Hironari Kamikubo, Mikio Kataoka, Masato Kawasaki, Ryuichi Kato, Soichi Wakatsuki*, Kazuhisa Nakayama*
- "Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect 13C NMR spectroscopy," Biophys. J., vol.102, pp579-586, 8 Feb. 2012
- Nur Alia Oktaviani, Trijntje J. Pool, Hironari Kamikubo, Jelle Slager, Ruud M. Scheek, Mikio Kataoka, Frans A.A. Mulder*
- "Changes in the Hydrogen-Bond Network around the Chromophore of Photoactive Yellow Protein in the Ground and Excited States," J Phys Chem B., vol.115, pp9306, Jul. 2011
- M. Mizuno, H. Kamikubo, M. Kataoka, Y. Mizutani
- "Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase," Biophysics, vol.7, pp1, Jan. 2011
- R. Shiba, M. Umeyama, S. Tsukasa, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Iwakura, M. Kataoka
- "Size-controlled aggregation of cube-shaped EuS nanocrystals with magneto-optic properties in solution," Langmuir, vol.27, pp104, Jan. 2011
- A. Tanaka, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
- "Size-controlled Aggregation of Cube-shaped EuS Nanocrystals with Magneto-optic Properties in Solution Phase," Langmuir, vol.27, no.1, pp104, Jan. 2011
- A. Tanaka, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
- "Cytochrome c polymerization by successive domain swapping at the C-terminal helix," Proc. Natl. Acad. Sci. USA, vol.107, no.29, pp12854, 6 Jul. 2010
- Hirota, S, Hattori, Y, Nagao, S, Taketa, M, Komori, H, Kamikubo, H, Wang, ZH, Takahashi, I, Negi, S, Sugiura, Y, Kataoka, M, Higuchi, Y
[ NAISTレポジトリ ] [ doi:10.1073/pnas.1001839107 ]
- "フォトアクティブイェロープロテインの中性子結晶構造解析," RADIOISOTOPES, vol.59, pp289-297, 2010.4.15
- 上久保裕生, 山口繁生, 片岡 幹雄
[ doi:10.3769/radioisotopes.59.289 ]
- "Size-controlled Aggregation of Cube-shaped EuS Nanocrystals with Magneto-optic Properties in Solution Phase," Langmuir, 1 Apr. 2010
- A. Tanaka, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
- "X線溶液散乱(2章3節)," 「入門 構造生物学」（編集：加藤龍一), vol.203, pp34-35, 2010.4.1
- 上久保裕生
- "Self-Assembly and Enhanced Magnetic Properties of Three-Dimensional Superlattice Structures Composed of Cube-Shaped EuS Nanocrystals," Chemistry of Materials, vol.22, pp1776-1781, 9 Mar. 2010
- Tanaka, A, Kamikubo, H, Doi, Y, Hinatsu, Y, Mikio Kataoka, Kawai, T, Hasegawa, Y
[ doi:10.1021/cm9032513 ]
- "Nonlocal Interactions Are Responsible for Tertiary Structure Formation in Staphylococcal Nuclease," Biophys. J., vol.98, pp678-786, 17 Feb. 2010
- Kato, S, Kamikubo, H, Hirano, S, Yamazaki, Y, Mikio Kataoka
[ doi:10.1016/j.bpj.2009.10.048 ]
- "Effect of conformational states on protein dynamical transition," Biochim. Biophys. Acta, vol.1804, pp27-33, Jan. 2010
- Nakagawa, H, Kamikubo, H, Mikio Kataoka
[ doi:10.1016/j.bbapap.2009.06.025 ]
- "Self-aggregation of magnetic semiconductor EuS nanocrystals," Thin Solid Films, 1 Apr. 2009
- Tanaka, A, Hasegawa, Y, Kamikubo, H, Kataoka, M, Kawai, T
[ doi:10.1016/j.tsf.2009.07.106 ]
- "Low-barrier hydrogen bond in photoactive yellow protein," Proc Natl Acad Sci U S A., vol.106, no.2, pp440-444, 13 Jan. 2009
- Yamaguchi, S, Kamikubo, H, Kurihara, K, Kuroki, R, Niimura, N, Shimizu, N, Yamazaki, Y, Mikio Kataoka
[ doi:10.1073/pnas.0811882106 ]
- "Nucleotide-Dependent Conformational Changes and Assembly of the AAA ATPase SKD1/VPS4B," Traffic, vol.9, no.12, pp2180-2189, 1 Dec. 2008
- Inoue, M, Kamikubo, H, Mikio Kataoka, Kato, R, Yoshimori, T, Wakatsuki, S, Kawasaki, M
[ doi:10.1111/j.1600-0854.2008.00831.x ]
- "Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants," Proteins: Structu. Funct. Bioinformat., vol.72, pp837-847, 15 Aug. 2008
- Onitsuka, M, Kamikubo, H, Yamazaki, Y, Mikio Kataoka
[ doi:10.1002/prot.21978 ]
- "Miranda cargo-binding domain forms an elongated coiled-coil homodimer in solution: Implications for asymmetric cell division in Drosophila," Protein Sci., vol.17, pp908-917, 5 Aug. 2008
- Yousef, MS, Kamikubo, H, Mikio Kataoka, Kato, R, Wakatsuki, S
[ doi:10.1110/ps.083431408 ]
- "Role of the N-terminal region in the function of the photosynthetic bacterium transcription regulator PpsR," Photochem. Photobiol., vol.84, pp839-844, Jul. 2008
- Yamazaki, Y, Fukusumi, H, Kamikubo, H, Mikio Kataoka
[ doi:10.1111/j.1751-1097.2008.00306.x ]
- "The photoreaction of the photoactive yellow protein domain in the light sensor histidine kinase Ppr is influenced by the C-terminal domains," Photochem. Photobiol., vol.84, pp895-902, Jul. 2008
- Kamikubo, H, Koyama, T, Hayashi, M, Shirai, K, Yamazaki, Y, Imamoto, Y, Mikio Kataoka
[ doi:10.1111/j.1751-1097.2008.00322.x ]
- "Diverse roles of glycine residues conserved in photoactive yellow proteins," Biophys. J., vol.94, pp3620-3628, 1 May. 2008
- Imamoto, Y, Tatsumi, S, Harigai, M, Yamazaki, Y, Kamikubo, H, Mikio Kataoka
[ doi:10.1529/biophysj.107.123414 ]
- "Characterization and crystallization of an IscU-type scaffold protein with bound [2Fe-2S] cluster from the hyperthermophile, Aquifex aeolicus," J Biochem., vol.142, pp577-586, Nov. 2007
- Shimomura, Y, Kamikubo, H, Nishi, Y, Masako, T, Mikio Kataoka, Kobayashi, Y, Fukuyama, K, Takahashi, Y
[ doi:10.1093/jb/mvm163 ]
- "Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1," Traffic, vol.8 (7), pp904-913, 7 Jul. 2007
- Inoue, M, Shiba, T, Ihara, K, Yamada, Y, Hirano, S, Kamikubo, H, Mikio Kataoka, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S
[ doi:10.1111/j.1600-0854.2007.00577.x ]
- "Structure of the small GTPase Rab27b shows an unexpected swapped dimer," Acta Cryst. D, vol.63, pp769-779, Jul. 2007
- Chavas, LMG, Torii, S, Kamikubo, H, Kawasaki, M, Ihara, K, Kato, R, Mikio Kataoka, Izumi, T, Wakatsuki, S
[ doi:10.1107/S0907444907019725 ]
- "Attempt to simplify the amino-acid sequence of photoactive yellow protein with a set of simple rules," Proteins: Structu. Funct. Bioinformat., vol.67, pp821-833, Jun. 2007
- Shirai, K, Yamazaki, Y, Kamikubo, H, Imamoto, Y, Mikio Kataoka
[ doi:10.1002/prot.21331 ]
- "Characterization of the solution structure of the M intermediate of photoactive yellow protein using high-angle solution X-ray scattering," Biophys. J., vol.92, pp3633-3642, 15 May. 2007
- Kamikubo, H, Shimizu, N, Harigai, M, Yamazaki, Y, Imamoto, Y, Mikio Kataoka
[ doi:10.1529/biophysj.106.097287 ]
- "Novel photochromic molecules based on 4,5-dithienyl thiazole with fast thermal bleaching rate," Chemistry of Materials, vol.19, pp3479, 1 Apr. 2007
- Kawai, S, Nakashima, T, Atsumi, K, Sakai, T, Harigai, M, Imamoto, Y, Kamikubo, H, Kataoka, M, Kawai, T
[ doi:10.1021/cm0630340 ]
- "Array of aromatic amino acid side chains located near the chromophore of photoactive yellow protein," Photochem. Photobiol., vol.83, pp280-285, 28 Mar. 2007
- Morishita, T, Harigai, M, Yamazaki, Y, Kamikubo, H, Mikio Kataoka, Imamoto, Y
[ doi:10.1562/2006-06-15-RA-929 ]
- "Preparation of large crystals of photoactive yellow protein for neutron diffraction and high resolution crystal structure analysis," Photochem. Photobiol., vol.83, pp336-338, 27 Feb. 2007
- Yamaguchi, S, Kamikubo, H, Shimizu, N, Yamazaki, Y, Imamoto, Y, Mikio Kataoka
[ doi:10.1562/2006-07-23-RA-977 ]
- "Conformational preference of polyglycine in solution to elongated structure," J. Am. Chem. Soc., vol.128, pp16338-16344, 20 Dec. 2006
- Ohnishi, S, Kamikubo, H, Onitsuka, M, Mikio Kataoka, Shortle, D
[ doi:10.1021/ja066008b ]
- "Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations," Materials Science and Engineering A, vol.442, pp356-360, 1 Apr. 2006
- Nakagawa, H, Tokuhisa, A, Kamikubo, H, Joti, Y, Kitao, A, Mikio Kataoka
[ doi:10.1016/j.msea.2005.12.082 ]
- "The crystal structure of the R52Q mutant demonstrates a role for R52 in chromophore pK(a) regulation in photoactive yellow protein," Biochemistry, vol.45(11), pp3542 -3547, 21 Mar. 2006
- Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Mikio Kataoka
[ doi:10.1021/bi051430a ]
- "Cloning and characterization of nif structural and regulatory genes in the purple sulfur bacterium, Halorhodospira halophila," J. Biosci. Bioeng., vol.101, pp263-270 , Mar. 2006
- Tsuihij, H, Yamazaki, Y, Kamikubo, H, Imamoto, Y, Mikio Kataoka
[ doi:10.1263/jbb.101.263 ]
- "pH-dependent equilibrium between long lived near-UV intermediates of photoactive yellow protein," J Biol Chem., vol.281, pp4318-4325, 17 Feb. 2006
- Shimizu, N, Imamoto, Y, Harigai, M, Kamikubo, H, Yamazaki, Y, Mikio Kataoka
[ doi:10.1074/jbc.M506403200 ]
- "Correction method and software for image distortion and nonuniform response in charge-coupled device-based X-ray detectors utilizing X-ray image intensifier," Jpn. J. Appl. Phys., vol.40, pp8684, 1 Apr. 2005
- Ito, K, Kamikubo, H, Yagi, N, Amemiya, Y
[ doi:10.1143/JJAP.44.8684 ]
- "Can the low-resolution structures of photointermediates of bacteriorhodopsin explain their crystal structures?," Biophys. J., vol.88, pp1925-1931, Mar. 2005
- Kamikubo, H, Mikio Kataoka
[ doi:10.1529/biophysj.104.045831 ]
- "Elucidation of information encoded in tryptophan 140 of staphylococcal nuclease," Proteins: Struct. Funct. Bioinformat., vol.58, pp271-277, 1 Feb. 2005
- Hirano, S, Kamikubo, H, Yamazaki, Y, Mikio Kataoka
[ doi:10.1002/prot.20333 ]
- "I.各種解析装置の原理と使用例 5.生体高分子の大きさ,形態,局所構造,物性,リガンド相互作用の測定装置 中性子散乱," 蛋白質核酸酵素, vol.49, pp1681, 2004.4.1
- 片岡 幹雄, 上久保 裕生
- "Time and frequency domain investigations on ultrafast photoreaction dynamics of photoactive yellow protein (PYP)," Rev. Laser Eng., vol.32, pp114-120, 2004.2
- Haik Chosrowjan, Noboru Mataga, Seiji Taniguchi, Masashi Unno, Hironari Kamikubo, Yasushi Imamoto, Mikio Kataoka
[ doi:10.2184/lsj.32.114 ]
- "Protein dynamical heterogeneity derived from neutron incoherent elastic scattering," J. Phys. Soc. Jpn., vol.73, pp491-495, Feb. 2004
- Nakagawa, H, Kamikubo, H, Tsukushi, I, Kanaya, T, Mikio Kataoka
[ doi:10.1143/JPSJ.73.491 ]
- "Role of an N-terminal loop in the secondary structural change of photoactive yellow protein," Biochemistry, vol.42, pp13893-13900, 2 Dec. 2003
- Harigai, M, Imamoto, Y, Kamikubo, H, Yamazaki, Y, Mikio Kataoka
[ doi:10.1021/bi034814e ]
- "Concentration-dependent tetramerization of bovine visual arrestin," Biophys. J., vol.85, pp1186-1195, 1 Aug. 2003
- Imamoto, Y, Tamura, C, Kamikubo, H, Mikio Kataoka
[ doi:10.1016/S0006-3495(03)74554-8 ]
- "タンパク質動力学研究における中性子とX線の役割," 波紋, vol.13, pp116-119, 2003.4.15
- 中川洋, 上久保裕生, 片岡 幹雄
- "Neutron inelastic scattering as a high-resolution vibrational spectroscopy: New tool for the study of protein dynamics," Spectroscopy, vol.17, pp529-535, 11 Apr. 2003
- Mikio Kataoka, Kamikubo, H, Nakagawa, H, Parker, SF, Smith, JC
- "Comparison of the photochemical reaction of photoactive yellow protein in crystal with reaction in solution," Spectroscopy, vol.17, pp345-353, 11 Apr. 2003
- Mano, E, Kamikubo, H, Imamoto, Y, Mikio Kataoka
- "Light-induced global conformational change of photoactive yellow protein in solution," Biochemistry, vol.41, pp13595-13601, 19 Nov. 2002
- Imamoto, Y, Kamikubo, H, Harigai, M, Shimizu, N, Mikio Kataoka
[ doi:10.1021/bi0264768 ]
- "Role of C-terminal region of Staphylococcal nuclease for foldability, stability, and activity," Proteins: Struct. Funct. Genet., vol.49, pp255-265, 1 Nov. 2002
- Hirano, S, Mihara, K, Yamazaki, Y, Kamikubo, H, Imamoto, Y, Mikio Kataoka
[ doi:10.1002/prot.10216 ]
- "Effect of organic anions on the photoreaction of photoactive yellow protein," J. Biochem., vol.132, pp257-263, Aug. 2002
- Shimizu, N, Kamikubo, H, Mihara, K, Imamoto, Y, Mikio Kataoka
- "Structure and photoreaction of photoactive yellow protein," Journal of Photoscience, vol.9, pp126, 1 Apr. 2002
- Y. Imamoto, M. Harigai, N. Shimizu, H. Kamikubo, M. Kataoka
- "光駆動プロトンポンプの一方向プロトン輸送機構," 応用光学, vol.2, pp1-6, 2002.4.1
- 上久保裕生, 片岡 幹雄
- "Native-like beta-hairpin retained in the cold-denatured state of bovine beta-lactoglobulin," J. Mol. Biol., vol.310, pp471-484, 6 Jul. 2001
- Katou, H, Hoshino, M, Kamikubo, H, Batt, CA, Goto, Y
[ doi:10.1006/jmbi.2001.4777 ]
- "Direct observation of three conformations of MutS protein regulated by adenine nucleotides," J. Mol. Biol., vol.309, pp227, 1 Apr. 2001
- Kato, R, Mikio Kataoka, Kamikubo, H, Kuramitsu, S
[ doi:10.1006/jmbi.2001.4752 ]
- "Time-resolved x-ray diffraction reveals multiple conformations in the M-N transition of the bacteriorhodopsin photocycle," Proc. Natl. Acad. Sci. U. S. A., vol.97, pp14278-14282, 19 Dec. 2000
- Oka, T, Yagi, N, Fujisawa, T, Kamikubo, H, Tokunaga, F, Mikio Kataoka
[ doi:10.1073/pnas.260504897 ]
- "Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation," FEBS Lett., vol.482, pp159-162, 29 Sep. 2000
- Kato, R, Mikio Kataoka, Mikawa, T, Masui, R, Nakagawa, N, Kamikubo, H, Kuramitsu, S
[ doi:10.1016/S0014-5793(00)02053-6 ]
- "Structures of photointermediates and their implications for the proton pump mechanism," Biochim. Biophys. Acta, vol.1460, pp166-176, 30 Aug. 2000
- Mikio Kataoka, Kamikubo, H
[ doi:10.1016/S0005-2728(00)00137-7 ]
- "Pressure and temperature effects on the phase transition from a dense droplet to a lamellar structure in a ternary microemulsion," J. Chem. Phys., vol.112, pp10608, 1 Apr. 2000
- Seto, H, Okuhara, D, Kawabata, Y, Takeda, T, Nagao, M, Suzuki, J, Kamikubo, H, Amemiya, Y
[ doi:10.1063/1.481695 ]
- "A partially unfolded structure of the alkaline-denatured state of pepsin and its implication for stability of the zymogen-derived protein," Biochemistry, vol.39, pp4182, 1 Apr. 2000
- Konno, T, Kamatari, YO, Tanaka, N, Kamikubo, H, Dobson, CM, Nagayama, K
[ doi:10.1021/bi991923d ]
- "Low energy dynamics of globular proteins studied by inelastic neutron scattering," J. Phys. Chem. Solid, vol.60, pp1285-1289, Sep. 1999
- Mikio Kataoka, Kamikubo, H, Yunoki, J, Tokunaga, F, Kanaya, T, Izumi, Y, Shibata, K
[ doi:10.1016/S0022-3697(99)00103-1 ]
- "バクテリオロドプシンの光反応中間体の構造とプロトンポンプ機構," 放射光, vol.12, pp184-193, 1999.6.30
- 岡俊彦, 上久保 裕生, 片岡 幹雄
- "Dynamical and structural modifications of staphylococcal nuclease on C-terminal truncation," Physica, vol.B 266, pp20-26, 3 May. 1999
- Mikio Kataoka, Ferrand, M, Goupil-Lamy, AV, Kamikubo, H, Yunoki, J, Oka, T, Smith, JC
[ doi:10.1016/S0921-4526(98)01488-4 ]
- "Conformational change of helix G in the bacteriorhodopsin photocycle: Investigation with heavy atom labeling and X-ray diffraction," Biophys. J., vol.76, pp1018-1023, Feb. 1999
- Oka, T, Kamikubo, H, Tokunaga, F, Lanyi, JK, Needleman, R, Mikio Kataoka
[ doi:10.1016/S0006-3495(99)77266-8 ]
- "Ordered structure formation of bacteriorhodopsin-hDHFR in a plasma membrane," Langmuir, vol.15, pp214-220, 5 Jan. 1999
- Nomura, S, Kajimura, N, Matoba, K, Miyata, T, Ortenberg, R, Mevarech, M, Kamikubo, H, Mikio Kataoka, Harada, Y
[ doi:10.1021/la980742u ]
- "A local electrostatic change is the cause of the large-scale protein conformation shift in bacteriorhodopsin," Proc. Natl. Acad. Sci. U. S. A., vol.94, pp5040, 1 Apr. 1997
- Brown, LS, Kamikubo, H, Zimanyi, L, Kataoka, M, Tokunaga, F, Verdegem, P, Lugtenburg, J, Lanyi, JK
[ doi:10.1073/pnas.94.10.5040 ]
- "X-ray diffraction studies of bacteriorhodopsin. Determination of the positions of mercury label at several engineered cysteine residues," Photochem. Photobiol., vol.66, pp768, 1 Apr. 1997
- Oka, T, Kamikubo, H, Tokunaga, F, Lanyi, JK, Needleman, R, Kataoka, M
[ doi:10.1111/j.1751-1097.1997.tb03222.x ]
- "The last phase of the reprotonation switch in bacteriorhodopsin: The transition between the M-type and the N-type protein conformation depends on hydration," Biochemistry, vol.36, pp12282, 1 Apr. 1997
- Kamikubo, H, Oka, T, Imamoto, Y, Tokunaga, F, Lanyi, JK, Kataoka, M
- "Structure of the N intermediate of bacteriorhodopsin revealed by x-ray diffraction," Proc. Natl. Acad. Sci. U. S. A., vol.93, pp1386, 1 Apr. 1996
- Kamikubo, H, Kataoka, M, Varo, G, Oka, T, Tokunaga, F, Needleman, R, Lanyi, JK
[ doi:10.1073/pnas.93.4.1386 ]
- "The structure difference of proteins isolated on substrate with different techniques as studied by the atomic force microscope," Scanning, vol.18, pp275, 1 Apr. 1996
- Umemura, K, Sutoh, K, Tokunaga, F, Kataoka, M, Kamikubo, H, Arakawa, H, Ikai, A
[ doi:10.1002/sca.1996.4950180403 ]
- "ENERGY COUPLING IN AN ION-PUMP - THE REPROTONATION SWITCH OF BACTERIORHODOPSIN," J. Mol. Biol., vol.243, pp621, 1 Apr. 1994
- KATAOKA, M, KAMIKUBO, H, TOKUNAGA, F, BROWN, LS, YAMAZAKI, Y, MAEDA, A, SHEVES, M, NEEDLEMAN, R, LANYI, JK
[ doi:10.1016/0022-2836(94)90037-X ]
- "TRIMERIC MUTANT BACTERIORHODOPSIN, D85N, SHOWS A MONOPHASIC CD SPECTRUM," FEBS Lett., vol.333, pp111, 1 Apr. 1993
- KATAOKA, M, MIHARA, K, KAMIKUBO, H, NEEDLEMAN, R, LANYI, JK, TOKUNAGA, F
[ doi:10.1016/0014-5793(93)80385-8 ]
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